Gm53016 Pseudogene Detail

Summary

• Symbol
  Gm53016
• Name
  predicted gene, 53016

• Feature Type
  pseudogene
• IDs
  MGI:6388906
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:39205547-39205706 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388906	pseudogene	Chr8:39205547-39205706 (-)
129S1/SvImJ	ENSMUSG00200008062	pseudogene	Chr8:34336327-34336486 (-)
A/J	ENSMUSG00195005963	pseudogene	Chr8:34811028-34811187 (-)
AKR/J	ENSMUSG00220005871	pseudogene	Chr8:34599989-34600148 (-)
BALB/cJ	ENSMUSG00180003450	pseudogene	Chr8:34355903-34356062 (-)
C3H/HeJ	ENSMUSG00175015146	pseudogene	Chr8:34530832-34530991 (-)
C57BL/6NJ	ENSMUSG00215008888	pseudogene	Chr8:34275462-34275621 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005901	pseudogene	Chr8:34489719-34489878 (-)
CBA/J	ENSMUSG00210012791	pseudogene	Chr8:34353249-34353408 (-)
DBA/2J	ENSMUSG00185006264	pseudogene	Chr8:40274643-40274802 (-)
FVB/NJ	ENSMUSG00205002373	pseudogene	Chr8:33549655-33549814 (-)
JF1/MsJ	ENSUMUG00000015746	pseudogene	Chr8:41956836-41956995 (-)
LP/J	ENSMUSG00230010090	pseudogene	Chr8:43924566-43924725 (-)
NOD/ShiLtJ	ENSMUSG00190016035	pseudogene	Chr8:34390799-34390958 (-)
NZO/HlLtJ	ENSMUSG00225015149	pseudogene	Chr8:47533704-47533863 (-)
PWK/PhJ	ENSLUMG00010012951	pseudogene	Chr8:34230763-34230922 (-)
SPRET/EiJ	ENSMSPG00010004584	pseudogene	Chr8:34935325-34935484 (-)
WSB/EiJ	ENSIUOG00005005877	pseudogene	Chr8:35180079-35180238 (-)

Homology

• Gene Tree
  Gm53016
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118594 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118594	Ensembl Gene Model | MGI Sequence Detail	160	C57BL/6J
transcript	ENSMUST00000239372	Ensembl | MGI Sequence Detail	160	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;