Gm53011 Pseudogene Detail

Summary

• Symbol
  Gm53011
• Name
  predicted gene, 53011

• Feature Type
  pseudogene
• IDs
  MGI:6388898
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:93497916-93503745 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  195 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388898	pseudogene	ChrX:93497916-93503745 (-)
129S1/SvImJ	ENSMUSG00200038353	pseudogene	ChrX:75270786-75276609 (-)
A/J	ENSMUSG00195032089	pseudogene	ChrX:79059866-79065699 (-)
AKR/J	ENSMUSG00220030539	pseudogene	ChrX:73791248-73797082 (-)
BALB/cJ	ENSMUSG00180022309	pseudogene	ChrX:75698681-75704522 (-)
C3H/HeJ	ENSMUSG00175019363	pseudogene	ChrX:79421957-79427792 (-)
C57BL/6NJ	ENSMUSG00215023158	pseudogene	ChrX:75952378-75958211 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028754	pseudogene	ChrX:76957192-76963010 (+)
CBA/J	ENSMUSG00210035786	pseudogene	ChrX:76131965-76137798 (-)
DBA/2J	ENSMUSG00185033149	pseudogene	ChrX:88418011-88423842 (-)
FVB/NJ	ENSMUSG00205025693	pseudogene	ChrX:75403458-75409293 (-)
JF1/MsJ	ENSUMUG00000021693	pseudogene	ChrX:109259607-109265349 (-)
LP/J	ENSMUSG00230013768	pseudogene	ChrX:95116172-95122003 (-)
NOD/ShiLtJ	ENSMUSG00190018709	pseudogene	ChrX:75315421-75321248 (-)
NZO/HlLtJ	ENSMUSG00225045602	pseudogene	ChrX:100252656-100258491 (-)
PWK/PhJ	ENSLUMG00010039070	pseudogene	ChrX:74593797-74599549 (-)
SPRET/EiJ	ENSMSPG00010032574	pseudogene	ChrX:78675364-78681059 (+)
WSB/EiJ	ENSIUOG00005041563	pseudogene	ChrX:75978406-75984245 (-)

Homology

• Gene Tree
  Gm53011
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118620 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118620	Ensembl Gene Model | MGI Sequence Detail	5830	C57BL/6J
transcript	ENSMUST00000239279	Ensembl | MGI Sequence Detail	2099	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53011:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163784	ChrX:93503380-93503382 (-)	364 bp