Gm53008 Pseudogene Detail

Summary

• Symbol
  Gm53008
• Name
  predicted gene, 53008

• Feature Type
  pseudogene
• IDs
  MGI:6388894
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:111948030-111948203 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388894	pseudogene	Chr14:111948030-111948203 (+)
129S1/SvImJ	ENSMUSG00200018060	pseudogene	Chr14:100838827-100839000 (+)
A/J	ENSMUSG00195004238	pseudogene	Chr14:100617139-100617312 (+)
AKR/J	ENSMUSG00220001160	pseudogene	Chr14:100370617-100370790 (+)
BALB/cJ	ENSMUSG00180010736	pseudogene	Chr14:100099298-100099471 (+)
C3H/HeJ	ENSMUSG00175005869	pseudogene	Chr14:102030114-102030287 (+)
C57BL/6NJ	ENSMUSG00215007552	pseudogene	Chr14:100210718-100210891 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002832	pseudogene	Chr14:101837807-101837979 (+)
CBA/J	ENSMUSG00210014022	pseudogene	Chr14:101003802-101003975 (+)
DBA/2J	ENSMUSG00185021435	pseudogene	Chr14:106155138-106155311 (+)
FVB/NJ	ENSMUSG00205008643	pseudogene	Chr14:99780868-99781041 (+)
JF1/MsJ	ENSUMUG00000012232	pseudogene	Chr14:117264983-117265155 (+)
LP/J	ENSMUSG00230002022	pseudogene	Chr14:118152667-118152839 (+)
NOD/ShiLtJ	ENSMUSG00190001904	pseudogene	Chr14:100853493-100853665 (+)
NZO/HlLtJ	ENSMUSG00225021948	pseudogene	Chr14:108161734-108161906 (+)
PWK/PhJ	ENSLUMG00010001143	pseudogene	Chr14:100123477-100123649 (+)
SPRET/EiJ	ENSMSPG00010012662	pseudogene	Chr14:104217157-104217329 (+)
WSB/EiJ	ENSIUOG00005006505	pseudogene	Chr14:100022424-100022597 (+)

Homology

• Gene Tree
  Gm53008
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118534 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118534	Ensembl Gene Model | MGI Sequence Detail	174	C57BL/6J
transcript	ENSMUST00000238868	Ensembl | MGI Sequence Detail	174	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;