Gm53007 Pseudogene Detail

Summary

• Symbol
  Gm53007
• Name
  predicted gene, 53007

• Feature Type
  pseudogene
• IDs
  MGI:6388893
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:111947510-111947936 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388893	pseudogene	Chr14:111947510-111947936 (+)
129S1/SvImJ	ENSMUSG00200018061	pseudogene	Chr14:100838307-100838733 (+)
A/J	ENSMUSG00195004239	pseudogene	Chr14:100616619-100617045 (+)
AKR/J	ENSMUSG00220001161	pseudogene	Chr14:100370097-100370523 (+)
BALB/cJ	ENSMUSG00180010740	pseudogene	Chr14:100098778-100099204 (+)
C3H/HeJ	ENSMUSG00175005871	pseudogene	Chr14:102029594-102030020 (+)
C57BL/6NJ	ENSMUSG00215007568	pseudogene	Chr14:100210198-100210624 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002833	pseudogene	Chr14:101837287-101837713 (+)
CBA/J	ENSMUSG00210014025	pseudogene	Chr14:101003282-101003708 (+)
DBA/2J	ENSMUSG00185021441	pseudogene	Chr14:106154618-106155044 (+)
FVB/NJ	ENSMUSG00205008650	pseudogene	Chr14:99780348-99780774 (+)
JF1/MsJ	ENSUMUG00000012007	pseudogene	Chr14:117264463-117264889 (+)
LP/J	ENSMUSG00230001859	pseudogene	Chr14:118152147-118152573 (+)
NOD/ShiLtJ	ENSMUSG00190001864	pseudogene	Chr14:100852973-100853399 (+)
NZO/HlLtJ	ENSMUSG00225021451	pseudogene	Chr14:108161214-108161640 (+)
PWK/PhJ	ENSLUMG00010001145	pseudogene	Chr14:100122957-100123383 (+)
SPRET/EiJ	ENSMSPG00010012667	pseudogene	Chr14:104216635-104217063 (+)
WSB/EiJ	ENSIUOG00005006510	pseudogene	Chr14:100021904-100022330 (+)

Homology

• Gene Tree
  Gm53007
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118561 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118561	Ensembl Gene Model | MGI Sequence Detail	427	C57BL/6J
transcript	ENSMUST00000238928	Ensembl | MGI Sequence Detail	427	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;