Gm53006 Pseudogene Detail

Summary

• Symbol
  Gm53006
• Name
  predicted gene, 53006

• Feature Type
  pseudogene
• IDs
  MGI:6388892
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:22115044-22115345 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388892	pseudogene	ChrX:22115044-22115345 (-)
129S1/SvImJ	ENSMUSG00200015693	pseudogene	ChrX:16871525-16871826 (-)
A/J	ENSMUSG00195007477	pseudogene	ChrX:16877202-16877503 (-)
AKR/J	ENSMUSG00220018320	pseudogene	ChrX:16374780-16375081 (-)
BALB/cJ	ENSMUSG00180023038	pseudogene	ChrX:16808435-16808736 (-)
C3H/HeJ	ENSMUSG00175030123	pseudogene	ChrX:16873430-16873731 (-)
C57BL/6NJ	ENSMUSG00215020035	pseudogene	ChrX:17460089-17460390 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027085	pseudogene	ChrX:16755497-16755798 (-)
CBA/J	ENSMUSG00210020551	pseudogene	ChrX:16905278-16905579 (-)
DBA/2J	ENSMUSG00185032808	pseudogene	ChrX:23506044-23506345 (-)
FVB/NJ	ENSMUSG00205023969	pseudogene	ChrX:16467014-16467315 (-)
JF1/MsJ	ENSUMUG00000027091	pseudogene	ChrX:37326783-37327084 (-)
LP/J	ENSMUSG00230006776	pseudogene	ChrX:28082057-28082358 (-)
NOD/ShiLtJ	ENSMUSG00190028652	pseudogene	ChrX:16862761-16863062 (-)
NZO/HlLtJ	ENSMUSG00225041366	pseudogene	ChrX:33315040-33315341 (-)
PWK/PhJ	ENSLUMG00010016604	pseudogene	ChrX:16724829-16725130 (-)
SPRET/EiJ	ENSMSPG00010010670	pseudogene	ChrX:18151573-18151874 (-)
WSB/EiJ	ENSIUOG00005032937	pseudogene	ChrX:13463945-13464246 (-)

Homology

• Gene Tree
  Gm53006
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118511 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118511	Ensembl Gene Model | MGI Sequence Detail	302	C57BL/6J
transcript	ENSMUST00000239065	Ensembl | MGI Sequence Detail	302	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;