Gm53005 Pseudogene Detail

Summary

• Symbol
  Gm53005
• Name
  predicted gene, 53005

• Feature Type
  pseudogene
• IDs
  MGI:6388891
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:24476901-24480676 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388891	pseudogene	Chr14:24476901-24480676 (+)
129S1/SvImJ	ENSMUSG00200015461	pseudogene	Chr14:16290143-16293918 (+)
A/J	ENSMUSG00195022169	pseudogene	Chr14:17358079-17361854 (+)
AKR/J	ENSMUSG00220027739	pseudogene	Chr14:16457861-16461636 (+)
BALB/cJ	ENSMUSG00180041698	pseudogene	Chr14:16450031-16453806 (+)
C3H/HeJ	ENSMUSG00175024739	pseudogene	Chr14:16517812-16521587 (+)
C57BL/6NJ	ENSMUSG00215033352	pseudogene	Chr14:16756354-16760129 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032972	pseudogene	Chr14:16606938-16610719 (+)
CBA/J	ENSMUSG00210027897	pseudogene	Chr14:16752605-16756380 (+)
DBA/2J	ENSMUSG00185044227	pseudogene	Chr14:21037700-21041475 (+)
FVB/NJ	ENSMUSG00205039968	pseudogene	Chr14:16579514-16583289 (+)
JF1/MsJ	ENSUMUG00000049556	pseudogene	Chr14:28244072-28246876 (+)
LP/J	ENSMUSG00230040579	pseudogene	Chr14:28319202-28322977 (+)
NOD/ShiLtJ	ENSMUSG00190037942	pseudogene	Chr14:16747083-16750859 (+)
NZO/HlLtJ	ENSMUSG00225037584	pseudogene	Chr14:22542806-22546581 (+)
PWK/PhJ	ENSLUMG00010022213	pseudogene	Chr14:4875674-4879451 (+)
SPRET/EiJ	ENSMSPG00010032225	pseudogene	Chr14:18404476-18408279 (+)
WSB/EiJ	ENSIUOG00005034593	pseudogene	Chr14:16591889-16595667 (+)

Homology

• Gene Tree
  Gm53005
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118592 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118592	Ensembl Gene Model | MGI Sequence Detail	3776	C57BL/6J
transcript	ENSMUST00000239332	Ensembl | MGI Sequence Detail	514	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;