Gm53004 Pseudogene Detail

Summary

• Symbol
  Gm53004
• Name
  predicted gene, 53004

• Feature Type
  pseudogene
• IDs
  MGI:6388890
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:24414351-24420646 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  243 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388890	pseudogene	Chr14:24414351-24420646 (+)
129S1/SvImJ	ENSMUSG00200015444	pseudogene	Chr14:16227584-16233880 (+)
A/J	ENSMUSG00195022111	pseudogene	Chr14:17295519-17301818 (+)
AKR/J	ENSMUSG00220027677	pseudogene	Chr14:16395314-16401609 (+)
BALB/cJ	ENSMUSG00180041622	pseudogene	Chr14:16387480-16393776 (+)
C3H/HeJ	ENSMUSG00175024685	pseudogene	Chr14:16455257-16461553 (+)
C57BL/6NJ	ENSMUSG00215033185	pseudogene	Chr14:16693800-16700096 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032877	pseudogene	Chr14:16553313-16559666 (+)
CBA/J	ENSMUSG00210027865	pseudogene	Chr14:16690051-16696348 (+)
DBA/2J	ENSMUSG00185044148	pseudogene	Chr14:20975149-20981443 (+)
FVB/NJ	ENSMUSG00205039825	pseudogene	Chr14:16516956-16523254 (+)
JF1/MsJ	ENSUMUG00000049461	pseudogene	Chr14:28176166-28182517 (+)
LP/J	ENSMUSG00230041119	pseudogene	Chr14:28256643-28262939 (+)
NOD/ShiLtJ	ENSMUSG00190037804	pseudogene	Chr14:16693364-16699663 (+)
NZO/HlLtJ	ENSMUSG00225037693	pseudogene	Chr14:22480253-22486548 (+)
PWK/PhJ	ENSLUMG00010022228	pseudogene	Chr14:4826139-4832437 (+)
SPRET/EiJ	ENSMSPG00010032098	pseudogene	Chr14:18348859-18355246 (+)
WSB/EiJ	ENSIUOG00005034506	pseudogene	Chr14:16538578-16544893 (+)

Homology

• Gene Tree
  Gm53004
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118584 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118584	Ensembl Gene Model | MGI Sequence Detail	6296	C57BL/6J
transcript	ENSMUST00000239338	Ensembl | MGI Sequence Detail	466	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;