Gm53001 Pseudogene Detail

Summary

• Symbol
  Gm53001
• Name
  predicted gene, 53001

• Feature Type
  pseudogene
• IDs
  MGI:6388887
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:150196882-150196957 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388887	pseudogene	Chr4:150196882-150196957 (+)
129S1/SvImJ	ENSMUSG00200047183	pseudogene	Chr4:141253382-141253457 (+)
A/J	ENSMUSG00195020354	pseudogene	Chr4:142894468-142894543 (+)
AKR/J	ENSMUSG00220028092	pseudogene	Chr4:142484220-142484295 (+)
BALB/cJ	ENSMUSG00180048185	pseudogene	Chr4:140577058-140577133 (+)
C3H/HeJ	ENSMUSG00175019475	pseudogene	Chr4:143864603-143864678 (+)
C57BL/6NJ	ENSMUSG00215026069	pseudogene	Chr4:142705671-142705746 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036487	pseudogene	Chr4:146566317-146566392 (+)
CBA/J	ENSMUSG00210005937	pseudogene	Chr4:142516253-142516328 (+)
DBA/2J	ENSMUSG00185016991	pseudogene	Chr4:146079390-146079465 (+)
FVB/NJ	ENSMUSG00205045517	pseudogene	Chr4:140975706-140975781 (+)
JF1/MsJ	ENSUMUG00000007758	pseudogene	Chr4:149095207-149095281 (+)
LP/J	ENSMUSG00230017590	pseudogene	Chr4:152811477-152811552 (+)
NOD/ShiLtJ	ENSMUSG00190004304	pseudogene	Chr4:142181987-142182062 (+)
NZO/HlLtJ	ENSMUSG00225024509	pseudogene	Chr4:156809631-156809706 (+)
PWK/PhJ	ENSLUMG00010028175	pseudogene	Chr4:141365771-141365846 (+)
SPRET/EiJ	ENSMSPG00010025606	pseudogene	Chr4:143289646-143289721 (+)
WSB/EiJ	ENSIUOG00005048505	pseudogene	Chr4:140350985-140351060 (+)

Homology

• Gene Tree
  Gm53001
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118596 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118596	Ensembl Gene Model | MGI Sequence Detail	76	C57BL/6J
transcript	ENSMUST00000239356	Ensembl | MGI Sequence Detail	76	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;