Gm52999 Pseudogene Detail

Summary

• Symbol
  Gm52999
• Name
  predicted gene, 52999

• Feature Type
  pseudogene
• IDs
  MGI:6388885
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:5409615-5410548 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388885	pseudogene	Chr19:5409615-5410548 (-)
129S1/SvImJ	ENSMUSG00200052456	pseudogene	Chr19:2171528-2172461 (-)
A/J	ENSMUSG00195054062	pseudogene	Chr19:2567838-2568771 (-)
AKR/J	ENSMUSG00220050568	pseudogene	Chr19:2340952-2341885 (-)
BALB/cJ	ENSMUSG00180052490	pseudogene	Chr19:2942562-2943495 (-)
C3H/HeJ	ENSMUSG00175014751	pseudogene	Chr19:2192769-2193702 (-)
C57BL/6NJ	ENSMUSG00215047153	pseudogene	Chr19:2409723-2410656 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043394	pseudogene	Chr19:2333594-2334520 (-)
CBA/J	ENSMUSG00210050228	pseudogene	Chr19:2192759-2193692 (-)
DBA/2J	ENSMUSG00185052832	pseudogene	Chr19:2569217-2570150 (-)
FVB/NJ	ENSMUSG00205053323	pseudogene	Chr19:2573451-2574384 (-)
JF1/MsJ	ENSUMUG00000056389	pseudogene	Chr19:2548888-2549822 (-)
LP/J	ENSMUSG00230054320	pseudogene	Chr19:3478450-3479383 (-)
NOD/ShiLtJ	ENSMUSG00190053355	pseudogene	Chr19:2102353-2103286 (-)
NZO/HlLtJ	ENSMUSG00225026894	pseudogene	Chr19:7187218-7188151 (-)
PWK/PhJ	ENSLUMG00010008771	pseudogene	Chr19:2317834-2318768 (-)
SPRET/EiJ	ENSMSPG00010050845	pseudogene	Chr19:2304747-2305676 (-)
WSB/EiJ	ENSIUOG00005050789	pseudogene	Chr19:2205280-2206213 (-)

Homology

• Gene Tree
  Gm52999
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118610 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118610	Ensembl Gene Model | MGI Sequence Detail	934	C57BL/6J
transcript	ENSMUST00000239201	Ensembl | MGI Sequence Detail	163	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;