Gm52998 Pseudogene Detail

Summary

• Symbol
  Gm52998
• Name
  predicted gene, 52998

• Feature Type
  pseudogene
• IDs
  MGI:6388884
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:6105696-6105836 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388884	pseudogene	Chr19:6105696-6105836 (+)
129S1/SvImJ	ENSMUSG00200053350	pseudogene	Chr19:2868117-2868257 (+)
129S1/SvImJ	ENSMUSG00200049486	pseudogene	Chr2:115515709-115515849 (+)
A/J	ENSMUSG00195053148	pseudogene	Chr19:3267717-3267857 (+)
A/J	ENSMUSG00195026311	pseudogene	Chr2:115564063-115564203 (+)
AKR/J	ENSMUSG00220044619	pseudogene	Chr2:115442332-115442472 (+)
AKR/J	ENSMUSG00220050276	pseudogene	Chr19:3040853-3040993 (+)
BALB/cJ	ENSMUSG00180051930	pseudogene	Chr19:3642443-3642583 (+)
BALB/cJ	ENSMUSG00180045993	pseudogene	Chr2:115369193-115369333 (+)
C3H/HeJ	ENSMUSG00175029496	pseudogene	Chr2:115829169-115829309 (+)
C3H/HeJ	ENSMUSG00175014091	pseudogene	Chr19:2892612-2892752 (+)
C57BL/6NJ	ENSMUSG00215048439	pseudogene	Chr19:3106445-3106585 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043217	pseudogene	Chr19:3026724-3026864 (+)
CBA/J	ENSMUSG00210050233	pseudogene	Chr19:2895331-2895471 (+)
CBA/J	ENSMUSG00210007804	pseudogene	Chr2:115670135-115670275 (+)
DBA/2J	ENSMUSG00185049409	pseudogene	Chr2:115365895-115366035 (+)
DBA/2J	ENSMUSG00185053942	pseudogene	Chr19:3271817-3271957 (+)
FVB/NJ	ENSMUSG00205053396	pseudogene	Chr19:3273984-3274124 (+)
FVB/NJ	ENSMUSG00205045177	pseudogene	Chr2:114580650-114580790 (+)
JF1/MsJ	ENSUMUG00000056923	pseudogene	Chr19:3240551-3240691 (+)
LP/J	ENSMUSG00230054311	pseudogene	Chr19:4174999-4175139 (+)
LP/J	ENSMUSG00230024248	pseudogene	Chr2:117175377-117175517 (+)
NOD/ShiLtJ	ENSMUSG00190048081	pseudogene	Chr2:115598491-115598631 (+)
NOD/ShiLtJ	ENSMUSG00190051953	pseudogene	Chr19:2802202-2802342 (+)
NZO/HlLtJ	ENSMUSG00225004927	pseudogene	Chr2:125076816-125076956 (+)
NZO/HlLtJ	ENSMUSG00225026875	pseudogene	Chr19:7883811-7883951 (+)
PWK/PhJ	ENSLUMG00010008116	pseudogene	Chr19:3008285-3008425 (+)
SPRET/EiJ	ENSMSPG00010051618	pseudogene	Chr19:3002761-3002901 (+)
WSB/EiJ	ENSIUOG00005050958	pseudogene	Chr19:2915570-2915710 (+)
WSB/EiJ	ENSIUOG00005030106	pseudogene	Chr2:115329936-115330076 (+)

Homology

• Gene Tree
  Gm52998
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000118496 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118496	Ensembl Gene Model | MGI Sequence Detail	141	C57BL/6J
transcript	ENSMUST00000238867	Ensembl | MGI Sequence Detail	141	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;