Gm52996 Pseudogene Detail

Summary

• Symbol
  Gm52996
• Name
  predicted gene, 52996

• Feature Type
  pseudogene
• IDs
  MGI:6388882
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:130806661-130806792 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388882	pseudogene	Chr7:130806661-130806792 (+)
129S1/SvImJ	ENSMUSG00200028027	pseudogene	Chr7:117343984-117344115 (+)
A/J	ENSMUSG00195046301	pseudogene	Chr7:121822099-121822230 (+)
AKR/J	ENSMUSG00220016838	pseudogene	Chr7:115282730-115282861 (+)
BALB/cJ	ENSMUSG00180013805	pseudogene	Chr7:118526731-118526862 (+)
C3H/HeJ	ENSMUSG00175019731	pseudogene	Chr7:119253239-119253370 (+)
C57BL/6NJ	ENSMUSG00215038909	pseudogene	Chr7:118522673-118522804 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210023639	pseudogene	Chr7:119008067-119008198 (+)
DBA/2J	ENSMUSG00185024822	pseudogene	Chr7:123324112-123324243 (+)
FVB/NJ	ENSMUSG00205044948	pseudogene	Chr7:118958641-118958772 (+)
JF1/MsJ	ENSUMUG00000051737	pseudogene	Chr7:128338382-128338513 (+)
LP/J	ENSMUSG00230053196	pseudogene	Chr7:129442489-129442620 (+)
NOD/ShiLtJ	ENSMUSG00190019797	pseudogene	Chr7:119148053-119148184 (+)
NZO/HlLtJ	ENSMUSG00225013096	pseudogene	Chr7:127681606-127681737 (+)
PWK/PhJ	ENSLUMG00010043427	pseudogene	Chr7:117516074-117516205 (+)
SPRET/EiJ	ENSMSPG00010014311	pseudogene	Chr7:118830986-118831117 (+)
WSB/EiJ	ENSIUOG00005034697	pseudogene	Chr7:119853248-119853379 (+)

Homology

• Gene Tree
  Gm52996
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000118585 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118585	Ensembl Gene Model | MGI Sequence Detail	132	C57BL/6J
transcript	ENSMUST00000239260	Ensembl | MGI Sequence Detail	132	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;