Gm52992 Gene Detail

Summary

• Symbol
  Gm52992
• Name
  predicted gene, 52992

• Feature Type
  lncRNA gene
• IDs
  MGI:6388876
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr14:24103883-24206278 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2780 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388876	lncRNA gene	Chr14:24103883-24206278 (+)
129S1/SvImJ	ENSMUSG00200015508	lncRNA gene	Chr14:15934224-16008321 (+)
A/J	ENSMUSG00195022608	lncRNA gene	Chr14:17012738-17086842 (+)
AKR/J	ENSMUSG00220028792	lncRNA gene	Chr14:16116480-16190587 (+)
BALB/cJ	ENSMUSG00180039819	lncRNA gene	Chr14:16104697-16178805 (+)
C3H/HeJ	ENSMUSG00175023830	lncRNA gene	Chr14:16172495-16246596 (+)
C57BL/6NJ	ENSMUSG00215035450	lncRNA gene	Chr14:16411021-16485124 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033420	lncRNA gene	Chr14:16275837-16349945 (+)
CBA/J	ENSMUSG00210027093	lncRNA gene	Chr14:16407316-16481415 (+)
DBA/2J	ENSMUSG00185043095	lncRNA gene	Chr14:20692402-20766497 (+)
FVB/NJ	ENSMUSG00205040648	lncRNA gene	Chr14:16226188-16300284 (+)
JF1/MsJ	ENSUMUG00000047187	lncRNA gene	Chr14:27902771-27973392 (+)
LP/J	ENSMUSG00230041053	lncRNA gene	Chr14:27973906-28047999 (+)
NOD/ShiLtJ	ENSMUSG00190038833	lncRNA gene	Chr14:16408701-16482461 (+)
NZO/HlLtJ	ENSMUSG00225037667	lncRNA gene	Chr14:22197729-22272051 (+)
PWK/PhJ	ENSLUMG00010021847	lncRNA gene	Chr14:4553058-4623753 (+)
SPRET/EiJ	ENSMSPG00010033478	lncRNA gene	Chr14:18052541-18134780 (+)
WSB/EiJ	ENSIUOG00005034022	lncRNA gene	Chr14:16250274-16329714 (+)

Homology

• Gene Tree
  Gm52992
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000118519 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118519	Ensembl Gene Model | MGI Sequence Detail	102396	C57BL/6J
transcript	ENSMUST00000238857	Ensembl | MGI Sequence Detail	1190	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm52992:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124574	Chr14:24132145-24132151 (+)	28,265 bp
Tssr124575	Chr14:24132173-24132189 (+)	28,298 bp
Tssr124576	Chr14:24132200-24132220 (+)	28,327 bp
Tssr124577	Chr14:24149638-24149671 (+)	45,772 bp
Tssr124578	Chr14:24150231-24150242 (+)	46,354 bp
Tssr124579	Chr14:24150354-24150361 (+)	46,475 bp
Tssr124580	Chr14:24154245-24154261 (+)	50,370 bp
Tssr124581	Chr14:24158887-24158889 (+)	55,005 bp