Gm52990 Pseudogene Detail

Summary

• Symbol
  Gm52990
• Name
  predicted gene, 52990

• Feature Type
  pseudogene
• IDs
  MGI:6388874
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:144220450-144234893 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  390 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388874	pseudogene	Chr4:144220450-144234893 (+)
129S1/SvImJ	ENSMUSG00200047946	pseudogene	Chr4:137335960-137351672 (+)
A/J	ENSMUSG00195035188	pseudogene	Chr4:138978929-138993377 (+)
AKR/J	ENSMUSG00220049522	pseudogene	Chr4:137691827-137706276 (+)
BALB/cJ	ENSMUSG00180046859	pseudogene	Chr4:136659621-136674069 (+)
C3H/HeJ	ENSMUSG00175041871	pseudogene	Chr4:137646704-137661145 (+)
C57BL/6NJ	ENSMUSG00215050736	pseudogene	Chr4:139017945-139032390 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013808	pseudogene	Chr4:138789350-138803074 (+)
CBA/J	ENSMUSG00210029644	pseudogene	Chr4:137249335-137263782 (+)
DBA/2J	ENSMUSG00185051936	pseudogene	Chr4:138944790-138960509 (+)
FVB/NJ	ENSMUSG00205042293	pseudogene	Chr4:136499493-136515197 (+)
JF1/MsJ	ENSUMUG00000046404	pseudogene	Chr4:139351456-139365907 (+)
LP/J	ENSMUSG00230040459	pseudogene	Chr4:142482777-142498487 (+)
NOD/ShiLtJ	ENSMUSG00190034771	pseudogene	Chr4:136837269-136852976 (+)
NZO/HlLtJ	ENSMUSG00225010637	pseudogene	Chr4:148498847-148513286 (+)
PWK/PhJ	ENSLUMG00010047293	pseudogene	Chr4:136348115-136363829 (+)
SPRET/EiJ	ENSMSPG00010038246	pseudogene	Chr4:138003526-138019785 (+)
WSB/EiJ	ENSIUOG00005047904	pseudogene	Chr4:136570333-136586052 (+)

Homology

• Gene Tree
  Gm52990
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118540 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118540	Ensembl Gene Model | MGI Sequence Detail	14444	C57BL/6J
transcript	ENSMUST00000239038	Ensembl | MGI Sequence Detail	873	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;