Gm52989 Pseudogene Detail

Summary

• Symbol
  Gm52989
• Name
  predicted gene, 52989

• Feature Type
  pseudogene
• IDs
  MGI:6388873
  NCBI Gene: 108169010
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:42587458-42589768 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388873	pseudogene	Chr4:42586703-42590250 (+)
129S1/SvImJ	ENSMUSG00200005462	pseudogene	Chr4:38826550-38829069 (-)
A/J	ENSMUSG00195003707	pseudogene	Chr4:39309209-39311728 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180028192	pseudogene	Chr4:38896010-38898529 (-)
C3H/HeJ	ENSMUSG00175024518	pseudogene	Chr4:38969768-38972097 (+)
C57BL/6NJ	ENSMUSG00215031928	pseudogene	Chr4:38807353-38809872 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004791	pseudogene	Chr4:39095095-39097614 (-)
CAST/EiJ	ENSTCUG00005004786	pseudogene	Chr4:38792782-38795092 (+)
CBA/J	ENSMUSG00210008003	pseudogene	Chr4:38726181-38728700 (-)
DBA/2J	ENSMUSG00185006972	pseudogene	Chr4:39089637-39092156 (-)
FVB/NJ	ENSMUSG00205027772	pseudogene	Chr4:38332862-38335381 (-)
JF1/MsJ	ENSUMUG00000032225	pseudogene	Chr4:39033130-39035441 (+)
LP/J	ENSMUSG00230042707	pseudogene	Chr4:42435083-42437393 (+)
NOD/ShiLtJ	ENSMUSG00190006111	pseudogene	Chr4:38951264-38953783 (-)
NZO/HlLtJ	ENSMUSG00225007375	pseudogene	Chr4:46869589-46871900 (+)
NZO/HlLtJ	ENSMUSG00225007455	pseudogene	Chr4:46839363-46841696 (+)
NZO/HlLtJ	ENSMUSG00225007447	pseudogene	Chr4:46525153-46527484 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010026634	pseudogene	Chr4:39256182-39258698 (-)
WSB/EiJ	ENSIUOG00005050125	pseudogene	Chr4:38704346-38706868 (-)

Homology

• Gene Tree
  Gm52989
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000118603 (Evidence)
• NCBI Gene
  108169010

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118603	Ensembl Gene Model | MGI Sequence Detail	2311	C57BL/6J
transcript	ENSMUST00000239216	Ensembl | MGI Sequence Detail	2311	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;