Gm52986 Pseudogene Detail

Summary

• Symbol
  Gm52986
• Name
  predicted gene, 52986

• Feature Type
  pseudogene
• IDs
  MGI:6388869
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:101257539-101257689 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388869	pseudogene	Chr11:101257539-101257689 (+)
129S1/SvImJ	ENSMUSG00200053508	pseudogene	Chr11:98528002-98528152 (+)
A/J	ENSMUSG00195052371	pseudogene	Chr11:98221444-98221594 (+)
AKR/J	ENSMUSG00220051564	pseudogene	Chr11:98457871-98458021 (+)
BALB/cJ	ENSMUSG00180052007	pseudogene	Chr11:98590110-98590260 (+)
C3H/HeJ	ENSMUSG00175052164	pseudogene	Chr11:98501561-98501711 (+)
C57BL/6NJ	ENSMUSG00215054440	pseudogene	Chr11:98077534-98077684 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051870	pseudogene	Chr11:98001105-98001255 (+)
CBA/J	ENSMUSG00210053461	pseudogene	Chr11:98223339-98223489 (+)
DBA/2J	ENSMUSG00185052620	pseudogene	Chr11:98551413-98551563 (+)
FVB/NJ	ENSMUSG00205050075	pseudogene	Chr11:98408248-98408398 (+)
JF1/MsJ	ENSUMUG00000055933	pseudogene	Chr11:98809817-98809967 (+)
LP/J	ENSMUSG00230051098	pseudogene	Chr11:99604050-99604200 (+)
NOD/ShiLtJ	ENSMUSG00190052766	pseudogene	Chr11:98589964-98590114 (+)
NZO/HlLtJ	ENSMUSG00225053509	pseudogene	Chr11:101639882-101640032 (+)
PWK/PhJ	ENSLUMG00010052263	pseudogene	Chr11:98358963-98359113 (+)
SPRET/EiJ	ENSMSPG00010051408	pseudogene	Chr11:98844756-98844906 (+)
WSB/EiJ	ENSIUOG00005050980	pseudogene	Chr11:98352198-98352348 (+)

Homology

• Gene Tree
  Gm52986
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118571 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118571	Ensembl Gene Model | MGI Sequence Detail	151	C57BL/6J
transcript	ENSMUST00000239064	Ensembl | MGI Sequence Detail	151	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;