Gm52985 Pseudogene Detail

Summary

• Symbol
  Gm52985
• Name
  predicted gene, 52985

• Feature Type
  pseudogene
• IDs
  MGI:6388868
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:62304171-62304312 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388868	pseudogene	Chr16:62304171-62304312 (-)
129S1/SvImJ	ENSMUSG00200021424	pseudogene	Chr16:59285381-59285522 (-)
A/J	ENSMUSG00195025247	pseudogene	Chr16:58869162-58869303 (-)
AKR/J	ENSMUSG00220020209	pseudogene	Chr16:59222181-59222322 (-)
BALB/cJ	ENSMUSG00180023707	pseudogene	Chr16:59043296-59043437 (-)
C3H/HeJ	ENSMUSG00175018059	pseudogene	Chr16:59321059-59321200 (-)
C57BL/6NJ	ENSMUSG00215026543	pseudogene	Chr16:59128318-59128459 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014241	pseudogene	Chr16:59226935-59227076 (-)
CBA/J	ENSMUSG00210019700	pseudogene	Chr16:59293199-59293340 (-)
DBA/2J	ENSMUSG00185025481	pseudogene	Chr16:59220685-59220826 (-)
FVB/NJ	ENSMUSG00205010399	pseudogene	Chr16:59014427-59014568 (-)
JF1/MsJ	ENSUMUG00000027192	pseudogene	Chr16:59397700-59397841 (-)
LP/J	ENSMUSG00230008796	pseudogene	Chr16:61780247-61780388 (-)
NOD/ShiLtJ	ENSMUSG00190007482	pseudogene	Chr16:59248025-59248166 (-)
NZO/HlLtJ	ENSMUSG00225036208	pseudogene	Chr16:65016288-65016429 (-)
PWK/PhJ	ENSLUMG00010011987	pseudogene	Chr16:59090667-59090808 (-)
SPRET/EiJ	ENSMSPG00010001633	pseudogene	Chr16:59738063-59738204 (-)
WSB/EiJ	ENSIUOG00005009521	pseudogene	Chr16:59355633-59355774 (-)

Homology

• Gene Tree
  Gm52985
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118558 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118558	Ensembl Gene Model | MGI Sequence Detail	142	C57BL/6J
transcript	ENSMUST00000239089	Ensembl | MGI Sequence Detail	142	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;