Gm52979 Pseudogene Detail

Summary

• Symbol
  Gm52979
• Name
  predicted gene, 52979

• Feature Type
  pseudogene
• IDs
  MGI:6388861
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:105437165-105447597 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  365 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388861	pseudogene	Chr8:105437165-105447597 (-)
129S1/SvImJ	ENSMUSG00200015155	pseudogene	Chr8:99735399-99746336 (-)
A/J	ENSMUSG00195004105	pseudogene	Chr8:100018920-100029860 (-)
AKR/J	ENSMUSG00220011851	pseudogene	Chr8:100184420-100195366 (-)
BALB/cJ	ENSMUSG00180004210	pseudogene	Chr8:100044318-100055255 (-)
C3H/HeJ	ENSMUSG00175002970	pseudogene	Chr8:100101084-100112015 (-)
C57BL/6NJ	ENSMUSG00215001391	pseudogene	Chr8:99715405-99726339 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023904	pseudogene	Chr8:99499664-99509820 (-)
CBA/J	ENSMUSG00210015383	pseudogene	Chr8:100029668-100040608 (-)
DBA/2J	ENSMUSG00185006018	pseudogene	Chr8:106137555-106148491 (-)
FVB/NJ	ENSMUSG00205019447	pseudogene	Chr8:99011425-99022366 (-)
JF1/MsJ	ENSUMUG00000015441	pseudogene	Chr8:108470783-108481723 (-)
LP/J	ENSMUSG00230008721	pseudogene	Chr8:109818083-109829025 (-)
NOD/ShiLtJ	ENSMUSG00190013797	pseudogene	Chr8:100167736-100178686 (-)
NZO/HlLtJ	ENSMUSG00225023206	pseudogene	Chr8:113168592-113179537 (-)
PWK/PhJ	ENSLUMG00010004165	pseudogene	Chr8:99971518-99983121 (-)
SPRET/EiJ	ENSMSPG00010040861	pseudogene	Chr8:102090129-102100452 (-)
WSB/EiJ	ENSIUOG00005006287	pseudogene	Chr8:100847795-100858805 (-)

Homology

• Gene Tree
  Gm52979
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118580 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118580	Ensembl Gene Model | MGI Sequence Detail	10433	C57BL/6J
transcript	ENSMUST00000239254	Ensembl | MGI Sequence Detail	244	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;