Gm52978 Pseudogene Detail

Summary

• Symbol
  Gm52978
• Name
  predicted gene, 52978

• Feature Type
  pseudogene
• IDs
  MGI:6388860
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:153891609-153892279 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388860	pseudogene	Chr2:153891609-153892279 (+)
129S1/SvImJ	ENSMUSG00200031228	pseudogene	Chr2:150808815-150809485 (+)
A/J	no annotation
AKR/J	ENSMUSG00220046949	pseudogene	Chr2:150412786-150413456 (+)
BALB/cJ	ENSMUSG00180045571	pseudogene	Chr2:150569592-150570262 (+)
C3H/HeJ	ENSMUSG00175046389	pseudogene	Chr2:151313821-151314491 (+)
C57BL/6NJ	ENSMUSG00215036236	pseudogene	Chr2:150738596-150739266 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043922	pseudogene	Chr2:149663537-149664195 (+)
CBA/J	ENSMUSG00210044808	pseudogene	Chr2:151250329-151250999 (+)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205039411	pseudogene	Chr2:149998320-149998990 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230037119	pseudogene	Chr2:152557490-152558160 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225005874	pseudogene	Chr2:160589234-160589904 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010028986	pseudogene	Chr2:153265846-153266766 (+)
WSB/EiJ	ENSIUOG00005048779	pseudogene	Chr2:150403005-150403675 (+)

Homology

• Gene Tree
  Gm52978
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000118490 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118490	Ensembl Gene Model | MGI Sequence Detail	671	C57BL/6J
transcript	ENSMUST00000238877	Ensembl | MGI Sequence Detail	671	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;