Gm52974 Pseudogene Detail

Summary

• Symbol
  Gm52974
• Name
  predicted gene, 52974

• Feature Type
  pseudogene
• IDs
  MGI:6388856
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:127338474-127361215 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  728 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388856	pseudogene	Chr2:127338474-127361215 (-)
129S1/SvImJ	ENSMUSG00200048674	pseudogene	Chr2:124392483-124415273 (-)
A/J	ENSMUSG00195032611	pseudogene	Chr2:124420668-124443463 (-)
AKR/J	ENSMUSG00220046152	pseudogene	Chr2:124186274-124209066 (-)
BALB/cJ	ENSMUSG00180048971	pseudogene	Chr2:124209751-124232514 (-)
C3H/HeJ	ENSMUSG00175047623	pseudogene	Chr2:124756536-124779297 (-)
C57BL/6NJ	ENSMUSG00215036144	pseudogene	Chr2:124259801-124282542 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039892	pseudogene	Chr2:123550722-123573430 (-)
CBA/J	ENSMUSG00210035434	pseudogene	Chr2:124606973-124629736 (-)
DBA/2J	ENSMUSG00185036808	pseudogene	Chr2:124261008-124283770 (-)
FVB/NJ	ENSMUSG00205042309	pseudogene	Chr2:123415620-123438407 (-)
JF1/MsJ	ENSUMUG00000031221	pseudogene	Chr2:124111363-124134124 (-)
LP/J	ENSMUSG00230039854	pseudogene	Chr2:126027918-126050706 (-)
NOD/ShiLtJ	ENSMUSG00190015893	pseudogene	Chr2:124385707-124408496 (-)
NZO/HlLtJ	ENSMUSG00225027620	pseudogene	Chr2:133934101-133956889 (-)
PWK/PhJ	ENSLUMG00010044861	pseudogene	Chr2:124003481-124026201 (-)
SPRET/EiJ	ENSMSPG00010036320	pseudogene	Chr2:126429568-126452337 (-)
WSB/EiJ	ENSIUOG00005043778	pseudogene	Chr2:124187712-124210430 (-)

Homology

• Gene Tree
  Gm52974
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118630 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118630	Ensembl Gene Model | MGI Sequence Detail	22742	C57BL/6J
transcript	ENSMUST00000239264	Ensembl | MGI Sequence Detail	474	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm52974:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26123	Chr2:127353055-127353060 (-)	8,157 bp
Tssr26122	Chr2:127353029-127353040 (-)	8,180 bp