Gm52973 Pseudogene Detail

Summary

• Symbol
  Gm52973
• Name
  predicted gene, 52973

• Feature Type
  pseudogene
• IDs
  MGI:6388855
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:50367705-50367911 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388855	pseudogene	Chr18:50367705-50367911 (+)
129S1/SvImJ	ENSMUSG00200031090	pseudogene	Chr18:47411170-47411376 (+)
A/J	ENSMUSG00195025672	pseudogene	Chr18:47561217-47561423 (+)
AKR/J	ENSMUSG00220021768	pseudogene	Chr18:47507373-47507579 (+)
BALB/cJ	ENSMUSG00180007842	pseudogene	Chr18:48092878-48093084 (+)
C3H/HeJ	ENSMUSG00175011337	pseudogene	Chr18:47691481-47691687 (+)
C57BL/6NJ	ENSMUSG00215009862	pseudogene	Chr18:47097990-47098196 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014459	pseudogene	Chr18:46971086-46971292 (+)
CBA/J	ENSMUSG00210022626	pseudogene	Chr18:47650485-47650691 (+)
DBA/2J	ENSMUSG00185028512	pseudogene	Chr18:47551460-47551666 (+)
FVB/NJ	ENSMUSG00205015993	pseudogene	Chr18:47027667-47027873 (+)
JF1/MsJ	ENSUMUG00000030264	pseudogene	Chr18:47524829-47525035 (+)
LP/J	ENSMUSG00230029909	pseudogene	Chr18:49587774-49587980 (+)
NOD/ShiLtJ	ENSMUSG00190028664	pseudogene	Chr18:47335317-47335523 (+)
NZO/HlLtJ	ENSMUSG00225027844	pseudogene	Chr18:49490506-49490712 (+)
PWK/PhJ	ENSLUMG00010022270	pseudogene	Chr18:47669666-47669872 (+)
SPRET/EiJ	ENSMSPG00010013460	pseudogene	Chr18:47974799-47975005 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm52973
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm52973
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000118595 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118595	Ensembl Gene Model | MGI Sequence Detail	207	C57BL/6J
transcript	ENSMUST00000239331	Ensembl | MGI Sequence Detail	207	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67