Gm52970 Pseudogene Detail

Summary

• Symbol
  Gm52970
• Name
  predicted gene, 52970

• Feature Type
  pseudogene
• IDs
  MGI:6388852
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:87965322-87966525 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388852	pseudogene	Chr1:87965322-87966525 (+)
129S1/SvImJ	ENSMUSG00200038998	pseudogene	Chr1:85183572-85184789 (+)
A/J	ENSMUSG00195033578	pseudogene	Chr1:84744084-84745303 (+)
AKR/J	ENSMUSG00220046913	pseudogene	Chr1:84892210-84893415 (+)
AKR/J	ENSMUSG00220047081	pseudogene	Chr1:84915706-84916903 (+)
BALB/cJ	ENSMUSG00180018650	pseudogene	Chr1:85054556-85055757 (+)
C3H/HeJ	ENSMUSG00175001693	pseudogene	Chr1:84933470-84934671 (+)
C57BL/6NJ	ENSMUSG00215037718	pseudogene	Chr1:84856471-84857676 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008016	pseudogene	Chr1:84484371-84485558 (+)
CBA/J	ENSMUSG00210012593	pseudogene	Chr1:84778773-84779976 (+)
DBA/2J	ENSMUSG00185017751	pseudogene	Chr1:89228381-89229598 (+)
FVB/NJ	ENSMUSG00205044614	pseudogene	Chr1:84178139-84179356 (+)
JF1/MsJ	ENSUMUG00000023014	pseudogene	Chr1:87989180-87990369 (+)
LP/J	ENSMUSG00230022564	pseudogene	Chr1:88513092-88514309 (+)
NOD/ShiLtJ	ENSMUSG00190034944	pseudogene	Chr1:84818910-84820127 (+)
NZO/HlLtJ	ENSMUSG00225004326	pseudogene	Chr1:92415811-92417028 (+)
PWK/PhJ	ENSLUMG00010047728	pseudogene	Chr1:84369288-84370510 (+)
SPRET/EiJ	ENSMSPG00010047794	pseudogene	Chr1:86407437-86408727 (+)
WSB/EiJ	ENSIUOG00005044447	pseudogene	Chr1:84406889-84408104 (+)

Homology

• Gene Tree
  Gm52970
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000118514 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118514	Ensembl Gene Model | MGI Sequence Detail	1204	C57BL/6J
transcript	ENSMUST00000238820	Ensembl | MGI Sequence Detail	816	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;