Gm52967 Pseudogene Detail

Summary

• Symbol
  Gm52967
• Name
  predicted gene, 52967

• Feature Type
  pseudogene
• IDs
  MGI:6388848
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:187445002-187445232 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388848	pseudogene	Chr1:187445002-187445232 (+)
129S1/SvImJ	ENSMUSG00200004563	pseudogene	Chr1:185216043-185216273 (+)
A/J	ENSMUSG00195009742	pseudogene	Chr1:184789901-184790131 (+)
AKR/J	ENSMUSG00220021417	pseudogene	Chr1:184044380-184044610 (+)
BALB/cJ	ENSMUSG00180020220	pseudogene	Chr1:184862975-184863205 (+)
C3H/HeJ	ENSMUSG00175023587	pseudogene	Chr1:185038374-185038604 (+)
C57BL/6NJ	ENSMUSG00215025262	pseudogene	Chr1:184262457-184262687 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043637	pseudogene	Chr1:182833675-182833905 (+)
CBA/J	ENSMUSG00210003982	pseudogene	Chr1:184717499-184717729 (+)
DBA/2J	ENSMUSG00185037458	pseudogene	Chr1:189330689-189330919 (+)
FVB/NJ	ENSMUSG00205004841	pseudogene	Chr1:183714569-183714799 (+)
JF1/MsJ	ENSUMUG00000007257	pseudogene	Chr1:188287498-188287728 (+)
LP/J	ENSMUSG00230025672	pseudogene	Chr1:188878041-188878271 (+)
NOD/ShiLtJ	ENSMUSG00190034273	pseudogene	Chr1:184696737-184696967 (+)
NZO/HlLtJ	ENSMUSG00225011515	pseudogene	Chr1:192620854-192621084 (+)
PWK/PhJ	ENSLUMG00010006749	pseudogene	Chr1:183548059-183548289 (+)
SPRET/EiJ	ENSMSPG00010027072	pseudogene	Chr1:187083674-187083904 (+)
WSB/EiJ	ENSIUOG00005005401	pseudogene	Chr1:184023452-184023682 (+)

Homology

• Gene Tree
  Gm52967
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118492 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118492	Ensembl Gene Model | MGI Sequence Detail	231	C57BL/6J
transcript	ENSMUST00000238811	Ensembl | MGI Sequence Detail	231	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;