Gm52966 Pseudogene Detail

Summary

• Symbol
  Gm52966
• Name
  predicted gene, 52966

• Feature Type
  pseudogene
• IDs
  MGI:6388847
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:99958759-99958947 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388847	pseudogene	Chr11:99958759-99958947 (-)
129S1/SvImJ	ENSMUSG00200053640	pseudogene	Chr11:97229956-97230144 (-)
A/J	ENSMUSG00195052749	pseudogene	Chr11:96911599-96911787 (-)
AKR/J	ENSMUSG00220052613	pseudogene	Chr11:97163981-97164169 (-)
BALB/cJ	ENSMUSG00180052929	pseudogene	Chr11:97292918-97293106 (-)
C3H/HeJ	ENSMUSG00175053044	pseudogene	Chr11:97203510-97203698 (-)
C57BL/6NJ	ENSMUSG00215054303	pseudogene	Chr11:96777697-96777885 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051513	pseudogene	Chr11:96698239-96698427 (-)
CBA/J	ENSMUSG00210053830	pseudogene	Chr11:96926285-96926473 (-)
DBA/2J	ENSMUSG00185053145	pseudogene	Chr11:97253384-97253572 (-)
FVB/NJ	ENSMUSG00205050918	pseudogene	Chr11:97108583-97108771 (-)
JF1/MsJ	ENSUMUG00000056087	pseudogene	Chr11:97505792-97505980 (-)
LP/J	ENSMUSG00230051300	pseudogene	Chr11:98306148-98306336 (-)
NOD/ShiLtJ	ENSMUSG00190052872	pseudogene	Chr11:97288223-97288411 (-)
NZO/HlLtJ	ENSMUSG00225052814	pseudogene	Chr11:100343123-100343311 (-)
PWK/PhJ	ENSLUMG00010051786	pseudogene	Chr11:97062295-97062483 (-)
SPRET/EiJ	ENSMSPG00010050908	pseudogene	Chr11:97552665-97552853 (-)
WSB/EiJ	ENSIUOG00005051507	pseudogene	Chr11:97053140-97053328 (-)

Homology

• Gene Tree
  Gm52966
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118536 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118536	Ensembl Gene Model | MGI Sequence Detail	189	C57BL/6J
transcript	ENSMUST00000238944	Ensembl | MGI Sequence Detail	189	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;