Gm52965 Gene Detail

Summary

• Symbol
  Gm52965
• Name
  predicted gene, 52965

• Feature Type
  lncRNA gene
• IDs
  MGI:6388845
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:128031940-128033463 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388845	lncRNA gene	Chr10:128031940-128033463 (+)
129S1/SvImJ	ENSMUSG00200013749	lncRNA gene	Chr10:124385511-124387022 (+)
A/J	ENSMUSG00195017521	lncRNA gene	Chr10:124848753-124850264 (+)
AKR/J	ENSMUSG00220006654	lncRNA gene	Chr10:124454371-124455882 (+)
BALB/cJ	ENSMUSG00180011789	lncRNA gene	Chr10:124839727-124841238 (+)
C3H/HeJ	ENSMUSG00175006210	lncRNA gene	Chr10:124839158-124840686 (+)
C57BL/6NJ	ENSMUSG00215019134	lncRNA gene	Chr10:124450342-124451865 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042392	lncRNA gene	Chr10:123837807-123839316 (+)
CBA/J	ENSMUSG00210009462	lncRNA gene	Chr10:124663384-124664912 (+)
DBA/2J	ENSMUSG00185027549	lncRNA gene	Chr10:124817681-124819204 (+)
FVB/NJ	ENSMUSG00205026310	lncRNA gene	Chr10:124059445-124060973 (+)
JF1/MsJ	ENSUMUG00000044606	lncRNA gene	Chr10:126125710-126127233 (+)
LP/J	ENSMUSG00230033737	lncRNA gene	Chr10:126739434-126740945 (+)
NOD/ShiLtJ	ENSMUSG00190016124	lncRNA gene	Chr10:124881336-124882859 (+)
NZO/HlLtJ	ENSMUSG00225037585	lncRNA gene	Chr10:130941854-130943382 (+)
PWK/PhJ	ENSLUMG00010010791	lncRNA gene	Chr10:124578074-124579597 (+)
SPRET/EiJ	ENSMSPG00010037278	lncRNA gene	Chr10:126542177-126543709 (+)
WSB/EiJ	ENSIUOG00005009012	lncRNA gene	Chr10:124455725-124457248 (+)

Homology

• Gene Tree
  Gm52965
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118550 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118550	Ensembl Gene Model | MGI Sequence Detail	1524	C57BL/6J
transcript	ENSMUST00000239116	Ensembl | MGI Sequence Detail	1524	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;