Zacn-ps Pseudogene Detail

Summary

• Symbol
  Zacn-ps
• Name
  zinc activated ion channel, pseudogene
• Synonyms
  Gm52964

• Feature Type
  pseudogene
• IDs
  MGI:6388844
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:116176013-116179069 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  212 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388844	pseudogene	Chr11:116176013-116179069 (+)
129S1/SvImJ	ENSMUSG00200052309	pseudogene	Chr11:113543277-113545960 (+)
A/J	ENSMUSG00195031992	pseudogene	Chr11:113247743-113249891 (+)
AKR/J	ENSMUSG00220033800	pseudogene	Chr11:113351902-113354828 (+)
BALB/cJ	ENSMUSG00180052637	pseudogene	Chr11:113544392-113546540 (+)
C3H/HeJ	ENSMUSG00175045895	pseudogene	Chr11:113499509-113501657 (+)
C57BL/6NJ	ENSMUSG00215047648	pseudogene	Chr11:113036547-113039229 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036502	pseudogene	Chr11:112901991-112904547 (+)
CBA/J	ENSMUSG00210051018	pseudogene	Chr11:113219501-113221649 (+)
DBA/2J	ENSMUSG00185027882	pseudogene	Chr11:113535890-113538038 (+)
FVB/NJ	ENSMUSG00205045547	pseudogene	Chr11:113341231-113344399 (+)
JF1/MsJ	ENSUMUG00000053750	pseudogene	Chr11:113803481-113806032 (+)
LP/J	ENSMUSG00230051366	pseudogene	Chr11:114592833-114594981 (+)
NOD/ShiLtJ	ENSMUSG00190050142	pseudogene	Chr11:113567089-113569772 (+)
NZO/HlLtJ	ENSMUSG00225053554	pseudogene	Chr11:116645233-116647916 (+)
PWK/PhJ	ENSLUMG00010025213	pseudogene	Chr11:113319777-113322077 (+)
SPRET/EiJ	ENSMSPG00010045049	pseudogene	Chr11:113839869-113842432 (+)
WSB/EiJ	ENSIUOG00005049107	pseudogene	Chr11:113307469-113310637 (+)

Homology

• Gene Tree
  Zacn-ps
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118502 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118502	Ensembl Gene Model | MGI Sequence Detail	3057	C57BL/6J
transcript	ENSMUST00000238971	Ensembl | MGI Sequence Detail	785	Not Applicable

Other
Accession IDs

MGI:7465153

References

• Summaries
  All 2
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;