Gm52963 Pseudogene Detail

Summary

• Symbol
  Gm52963
• Name
  predicted gene, 52963

• Feature Type
  pseudogene
• IDs
  MGI:6388843
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:99638189-99638377 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388843	pseudogene	Chr11:99638189-99638377 (-)
129S1/SvImJ	ENSMUSG00200053762	pseudogene	Chr11:96902583-96902771 (-)
A/J	ENSMUSG00195052495	pseudogene	Chr11:96604483-96604671 (-)
AKR/J	ENSMUSG00220052063	pseudogene	Chr11:96864438-96864626 (-)
BALB/cJ	ENSMUSG00180053013	pseudogene	Chr11:96974891-96975079 (-)
C3H/HeJ	ENSMUSG00175052856	pseudogene	Chr11:96876116-96876304 (-)
C57BL/6NJ	ENSMUSG00215054457	pseudogene	Chr11:96457065-96457253 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051133	pseudogene	Chr11:96402415-96402618 (-)
CBA/J	ENSMUSG00210053827	pseudogene	Chr11:96608245-96608433 (-)
DBA/2J	ENSMUSG00185052403	pseudogene	Chr11:96926017-96926205 (-)
FVB/NJ	ENSMUSG00205049775	pseudogene	Chr11:96791875-96792063 (-)
JF1/MsJ	ENSUMUG00000055517	pseudogene	Chr11:97219327-97219515 (-)
LP/J	ENSMUSG00230051246	pseudogene	Chr11:97978830-97979018 (-)
NOD/ShiLtJ	ENSMUSG00190052983	pseudogene	Chr11:96960897-96961085 (-)
NZO/HlLtJ	ENSMUSG00225053044	pseudogene	Chr11:100036719-100036907 (-)
PWK/PhJ	ENSLUMG00010051887	pseudogene	Chr11:96777039-96777227 (-)
SPRET/EiJ	ENSMSPG00010050990	pseudogene	Chr11:97256823-97256960 (-)
WSB/EiJ	ENSIUOG00005051655	pseudogene	Chr11:96736823-96737011 (-)

Homology

• Gene Tree
  Gm52963
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118609 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118609	Ensembl Gene Model | MGI Sequence Detail	189	C57BL/6J
transcript	ENSMUST00000239317	Ensembl | MGI Sequence Detail	189	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;