Gm52962 Pseudogene Detail

Summary

• Symbol
  Gm52962
• Name
  predicted gene, 52962

• Feature Type
  pseudogene
• IDs
  MGI:6388842
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:99595830-99595976 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  34

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388842	pseudogene	Chr11:99595830-99595976 (-)
129S1/SvImJ	ENSMUSG00200053751	pseudogene	Chr11:96860193-96860339 (-)
129S1/SvImJ	ENSMUSG00200053773	pseudogene	Chr11:96829211-96829357 (-)
A/J	ENSMUSG00195053498	pseudogene	Chr11:96535516-96535662 (-)
A/J	ENSMUSG00195052478	pseudogene	Chr11:96566555-96566701 (-)
AKR/J	ENSMUSG00220053072	pseudogene	Chr11:96794700-96794846 (-)
AKR/J	ENSMUSG00220052039	pseudogene	Chr11:96825760-96825906 (-)
BALB/cJ	ENSMUSG00180052989	pseudogene	Chr11:96932550-96932696 (-)
BALB/cJ	ENSMUSG00180053113	pseudogene	Chr11:96849124-96855821 (-)
BALB/cJ	ENSMUSG00180053107	pseudogene	Chr11:96822871-96823017 (-)
C3H/HeJ	ENSMUSG00175052831	pseudogene	Chr11:96833736-96833882 (-)
C3H/HeJ	ENSMUSG00175053127	pseudogene	Chr11:96802759-96802905 (-)
C57BL/6NJ	ENSMUSG00215054450	pseudogene	Chr11:96414696-96414842 (-)
C57BL/6NJ	ENSMUSG00215054533	pseudogene	Chr11:96383707-96383853 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051104	pseudogene	Chr11:96352763-96352909 (-)
CAST/EiJ	ENSTCUG00005051922	pseudogene	Chr11:96321557-96328297 (-)
CBA/J	ENSMUSG00210053839	pseudogene	Chr11:96508623-96508769 (-)
CBA/J	ENSMUSG00210053821	pseudogene	Chr11:96565905-96566051 (-)
CBA/J	ENSMUSG00210053841	pseudogene	Chr11:96534868-96541571 (-)
DBA/2J	ENSMUSG00185053835	pseudogene	Chr11:96852652-96852798 (-)
DBA/2J	ENSMUSG00185052353	pseudogene	Chr11:96883629-96883775 (-)
FVB/NJ	ENSMUSG00205049731	pseudogene	Chr11:96749487-96749633 (-)
FVB/NJ	ENSMUSG00205051506	pseudogene	Chr11:96718496-96718642 (-)
JF1/MsJ	ENSUMUG00000055498	pseudogene	Chr11:97174670-97174816 (-)
LP/J	ENSMUSG00230051240	pseudogene	Chr11:97936443-97936589 (-)
LP/J	ENSMUSG00230051468	pseudogene	Chr11:97905466-97905612 (-)
NOD/ShiLtJ	ENSMUSG00190052959	pseudogene	Chr11:96918515-96918661 (-)
NOD/ShiLtJ	ENSMUSG00190053227	pseudogene	Chr11:96887539-96887685 (-)
NZO/HlLtJ	ENSMUSG00225053019	pseudogene	Chr11:99994334-99994480 (-)
NZO/HlLtJ	ENSMUSG00225053448	pseudogene	Chr11:99963333-99963479 (-)
PWK/PhJ	ENSLUMG00010051842	pseudogene	Chr11:96732463-96732609 (-)
SPRET/EiJ	ENSMSPG00010050994	pseudogene	Chr11:97251279-97251425 (-)
WSB/EiJ	ENSIUOG00005051986	pseudogene	Chr11:96667110-96667256 (-)
WSB/EiJ	ENSIUOG00005051629	pseudogene	Chr11:96698146-96698292 (-)

Homology

• Gene Tree
  Gm52962
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36

• Ensembl
  ENSMUSG00000118639 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118639	Ensembl Gene Model | MGI Sequence Detail	147	C57BL/6J
transcript	ENSMUST00000239175	Ensembl | MGI Sequence Detail	147	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;