Gm52961 Pseudogene Detail

Summary

• Symbol
  Gm52961
• Name
  predicted gene, 52961

• Feature Type
  pseudogene
• IDs
  MGI:6388841
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:99590411-99590503 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388841	pseudogene	Chr11:99590411-99590503 (-)
129S1/SvImJ	ENSMUSG00200053753	pseudogene	Chr11:96854775-96854867 (-)
A/J	ENSMUSG00195052481	pseudogene	Chr11:96561141-96561233 (-)
AKR/J	ENSMUSG00220052072	pseudogene	Chr11:96820334-96820426 (-)
BALB/cJ	ENSMUSG00180052992	pseudogene	Chr11:96927127-96927219 (-)
C3H/HeJ	ENSMUSG00175052840	pseudogene	Chr11:96828319-96828411 (-)
C57BL/6NJ	ENSMUSG00215054451	pseudogene	Chr11:96409277-96409369 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051109	pseudogene	Chr11:96347341-96347433 (-)
CBA/J	ENSMUSG00210053822	pseudogene	Chr11:96560483-96560575 (-)
DBA/2J	ENSMUSG00185052363	pseudogene	Chr11:96878212-96878304 (-)
FVB/NJ	ENSMUSG00205049742	pseudogene	Chr11:96744069-96744161 (-)
JF1/MsJ	ENSUMUG00000055500	pseudogene	Chr11:97169249-97169341 (-)
LP/J	ENSMUSG00230051168	pseudogene	Chr11:97931026-97931118 (-)
NOD/ShiLtJ	ENSMUSG00190052963	pseudogene	Chr11:96913097-96913189 (-)
NZO/HlLtJ	ENSMUSG00225052848	pseudogene	Chr11:99988915-99989007 (-)
PWK/PhJ	ENSLUMG00010051852	pseudogene	Chr11:96727054-96727146 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051659	pseudogene	Chr11:96692726-96692818 (-)

Homology

• Gene Tree
  Gm52961
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000118634 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118634	Ensembl Gene Model | MGI Sequence Detail	93	C57BL/6J
transcript	ENSMUST00000239224	Ensembl | MGI Sequence Detail	93	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;