Gm52960 Pseudogene Detail

Summary

• Symbol
  Gm52960
• Name
  predicted gene, 52960

• Feature Type
  pseudogene
• IDs
  MGI:6388840
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:167956797-168014584 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1727 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388840	pseudogene	Chr2:167956797-168014584 (+)
129S1/SvImJ	ENSMUSG00200040895	pseudogene	Chr2:164848679-164906103 (+)
A/J	ENSMUSG00195025301	pseudogene	Chr2:165186354-165244256 (+)
AKR/J	ENSMUSG00220037859	pseudogene	Chr2:164493696-164551621 (+)
BALB/cJ	ENSMUSG00180040493	pseudogene	Chr2:164639942-164697856 (+)
C3H/HeJ	ENSMUSG00175045075	pseudogene	Chr2:165411812-165469678 (+)
C57BL/6NJ	ENSMUSG00215031218	pseudogene	Chr2:164834723-164892636 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009367	pseudogene	Chr2:163720080-163777372 (+)
CBA/J	ENSMUSG00210043531	pseudogene	Chr2:165320266-165378165 (+)
DBA/2J	ENSMUSG00185027018	pseudogene	Chr2:165034036-165091919 (+)
FVB/NJ	ENSMUSG00205032458	pseudogene	Chr2:164066735-164124640 (+)
JF1/MsJ	ENSUMUG00000042829	pseudogene	Chr2:164679159-164736501 (+)
LP/J	ENSMUSG00230013664	pseudogene	Chr2:166609441-166666846 (+)
NOD/ShiLtJ	ENSMUSG00190045774	pseudogene	Chr2:164725230-164783113 (+)
NZO/HlLtJ	ENSMUSG00225003297	pseudogene	Chr2:174606888-174664786 (+)
PWK/PhJ	ENSLUMG00010038699	pseudogene	Chr2:164581311-164639210 (+)
SPRET/EiJ	ENSMSPG00010033254	pseudogene	Chr2:167337364-167395065 (+)
WSB/EiJ	ENSIUOG00005025606	pseudogene	Chr2:164437708-164495117 (+)

Homology

• Gene Tree
  Gm52960
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118526 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118526	Ensembl Gene Model | MGI Sequence Detail	57788	C57BL/6J
transcript	ENSMUST00000239040	Ensembl | MGI Sequence Detail	577	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm52960:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21866	Chr2:167967630-167967636 (+)	10,836 bp