Gm52956 Pseudogene Detail

Summary

• Symbol
  Gm52956
• Name
  predicted gene, 52956

• Feature Type
  pseudogene
• IDs
  MGI:6388836
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:139064235-139064491 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388836	pseudogene	Chr4:139064235-139064491 (-)
129S1/SvImJ	ENSMUSG00200047558	pseudogene	Chr4:132478352-132478608 (-)
A/J	ENSMUSG00195037315	pseudogene	Chr4:133821920-133822176 (-)
AKR/J	ENSMUSG00220048818	pseudogene	Chr4:132812561-132812796 (-)
BALB/cJ	ENSMUSG00180048091	pseudogene	Chr4:131452477-131452712 (-)
C3H/HeJ	ENSMUSG00175040960	pseudogene	Chr4:132480619-132480854 (-)
C57BL/6NJ	ENSMUSG00215050666	pseudogene	Chr4:134007377-134007633 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210029560	pseudogene	Chr4:132104659-132104894 (-)
DBA/2J	ENSMUSG00185052108	pseudogene	Chr4:133618361-133618596 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000045485	pseudogene	Chr4:134319985-134320241 (-)
LP/J	ENSMUSG00230040800	pseudogene	Chr4:137417013-137417269 (-)
NOD/ShiLtJ	ENSMUSG00190038960	pseudogene	Chr4:131880737-131880993 (-)
NZO/HlLtJ	ENSMUSG00225010465	pseudogene	Chr4:143371630-143371886 (-)
PWK/PhJ	ENSLUMG00010046680	pseudogene	Chr4:131305831-131306066 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005045297	pseudogene	Chr4:131766436-131766671 (-)

Homology

• Gene Tree
  Gm52956
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000118507 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118507	Ensembl Gene Model | MGI Sequence Detail	257	C57BL/6J
transcript	ENSMUST00000239093	Ensembl | MGI Sequence Detail	257	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;