Gm52954 Pseudogene Detail

Summary

• Symbol
  Gm52954
• Name
  predicted gene, 52954

• Feature Type
  pseudogene
• IDs
  MGI:6388833
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:50279855-50287581 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  290 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388833	pseudogene	Chr17:50279855-50287581 (+)
129S1/SvImJ	ENSMUSG00200028545	pseudogene	Chr17:45484565-45492287 (+)
A/J	ENSMUSG00195022367	pseudogene	Chr17:46971999-46979728 (+)
AKR/J	ENSMUSG00220038857	pseudogene	Chr17:45972019-45979744 (+)
BALB/cJ	ENSMUSG00180026886	pseudogene	Chr17:46728262-46735987 (+)
C3H/HeJ	ENSMUSG00175016949	pseudogene	Chr17:46035697-46043422 (+)
C57BL/6NJ	ENSMUSG00215036393	pseudogene	Chr17:45604723-45612449 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026328	pseudogene	Chr17:46787663-46795393 (+)
CBA/J	ENSMUSG00210039000	pseudogene	Chr17:45785255-45792976 (+)
DBA/2J	ENSMUSG00185030065	pseudogene	Chr17:48684372-48692099 (+)
FVB/NJ	ENSMUSG00205053379	pseudogene	Chr17:46255386-46263121 (+)
JF1/MsJ	ENSUMUG00000038536	pseudogene	Chr17:48370261-48378094 (+)
LP/J	ENSMUSG00230041999	pseudogene	Chr17:49596071-49603793 (+)
NOD/ShiLtJ	ENSMUSG00190018991	pseudogene	Chr17:45765483-45773214 (+)
NZO/HlLtJ	ENSMUSG00225043738	pseudogene	Chr17:51831557-51839287 (+)
PWK/PhJ	ENSLUMG00010035944	pseudogene	Chr17:45601119-45608848 (+)
SPRET/EiJ	ENSMSPG00010039483	pseudogene	Chr17:45809858-45817563 (+)
WSB/EiJ	ENSIUOG00005028519	pseudogene	Chr17:46637005-46644735 (+)

Homology

• Gene Tree
  Gm52954
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118535 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118535	Ensembl Gene Model | MGI Sequence Detail	7727	C57BL/6J
transcript	ENSMUST00000239097	Ensembl | MGI Sequence Detail	414	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;