Gm52952 Pseudogene Detail

Summary

• Symbol
  Gm52952
• Name
  predicted gene, 52952

• Feature Type
  pseudogene
• IDs
  MGI:6388831
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:92102743-92104355 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388831	pseudogene	Chr3:92102743-92104355 (+)
129S1/SvImJ	ENSMUSG00200039758	pseudogene	Chr3:88965050-88966662 (+)
A/J	ENSMUSG00195053453	pseudogene	Chr3:88974746-88976358 (+)
AKR/J	ENSMUSG00220051869	pseudogene	Chr3:88190673-88192285 (+)
BALB/cJ	ENSMUSG00180050431	pseudogene	Chr3:89100053-89101676 (+)
C3H/HeJ	ENSMUSG00175049320	pseudogene	Chr3:88907347-88908959 (+)
C57BL/6NJ	ENSMUSG00215050684	pseudogene	Chr3:89346609-89348221 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048644	pseudogene	Chr3:89234571-89236221 (+)
CBA/J	ENSMUSG00210048652	pseudogene	Chr3:89027149-89028761 (+)
DBA/2J	ENSMUSG00185054091	pseudogene	Chr3:89155878-89157490 (+)
FVB/NJ	ENSMUSG00205049975	pseudogene	Chr3:87957978-87959590 (+)
JF1/MsJ	ENSUMUG00000053339	pseudogene	Chr3:88730683-88732360 (+)
LP/J	ENSMUSG00230035945	pseudogene	Chr3:91188310-91189922 (+)
NOD/ShiLtJ	ENSMUSG00190050838	pseudogene	Chr3:89354183-89355806 (+)
NZO/HlLtJ	ENSMUSG00225012545	pseudogene	Chr3:93939895-93941507 (+)
PWK/PhJ	ENSLUMG00010052189	pseudogene	Chr3:88832842-88834454 (+)
SPRET/EiJ	ENSMSPG00010050305	pseudogene	Chr3:89281188-89282956 (+)
WSB/EiJ	ENSIUOG00005050891	pseudogene	Chr3:89469996-89471619 (+)

Homology

• Gene Tree
  Gm52952
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118547 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118547	Ensembl Gene Model | MGI Sequence Detail	1613	C57BL/6J
transcript	ENSMUST00000238998	Ensembl | MGI Sequence Detail	1613	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm52952:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30281	Chr3:92101633-92101635 (+)	-1,109 bp