Gm52950 Pseudogene Detail

Summary

• Symbol
  Gm52950
• Name
  predicted gene, 52950

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:6388829
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:85177418-85180029 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388829	pseudogene	Chr1:85177334-85180892 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195033986	pseudogene	Chr1:82111320-82114276 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180018224	pseudogene	Chr1:82541300-82541409 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215034511	pseudogene	Chr1:82358230-82358875 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007478	pseudogene	Chr1:82063607-82067172 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185017257	pseudogene	Chr1:83483669-83487227 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000021576	pseudogene	Chr1:83652883-83656443 (+)
JF1/MsJ	ENSUMUG00000022457	pseudogene	Chr1:84862609-84866154 (+)
JF1/MsJ	ENSUMUG00000025913	pseudogene	Chr1:85032415-85045880 (-)
JF1/MsJ	ENSUMUG00000025701	pseudogene	Chr1:84452040-84465905 (-)
JF1/MsJ	ENSUMUG00000021612	pseudogene	Chr1:84276233-84279784 (+)
LP/J	ENSMUSG00230021786	pseudogene	Chr1:83421201-83424759 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225004549	pseudogene	Chr1:86665012-86668570 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000118618 (Evidence), ENSMUSG00000121342 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118618	Ensembl Gene Model | MGI Sequence Detail	2612	C57BL/6J
transcript	ENSMUST00000239303	Ensembl | MGI Sequence Detail	195	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;