Gm52948 Pseudogene Detail

Summary

• Symbol
  Gm52948
• Name
  predicted gene, 52948

• Feature Type
  pseudogene
• IDs
  MGI:6388827
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:84406895-84423184 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  547 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388827	pseudogene	Chr2:84406895-84423184 (-)
129S1/SvImJ	ENSMUSG00200054172	pseudogene	Chr2:81423310-81439600 (-)
A/J	ENSMUSG00195053788	pseudogene	Chr2:81536708-81552694 (-)
AKR/J	ENSMUSG00220002406	pseudogene	Chr2:81415377-81431363 (-)
BALB/cJ	ENSMUSG00180054880	pseudogene	Chr2:81464553-81480536 (-)
C3H/HeJ	ENSMUSG00175054220	pseudogene	Chr2:81604152-81620133 (-)
C57BL/6NJ	ENSMUSG00215053604	pseudogene	Chr2:81508407-81524697 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031495	pseudogene	Chr2:80955053-80971148 (-)
CBA/J	ENSMUSG00210040709	pseudogene	Chr2:81632058-81648035 (-)
DBA/2J	ENSMUSG00185057105	pseudogene	Chr2:81460794-81476776 (-)
FVB/NJ	ENSMUSG00205020025	pseudogene	Chr2:80836491-80852519 (-)
JF1/MsJ	ENSUMUG00000033203	pseudogene	Chr2:81385565-81401660 (-)
LP/J	ENSMUSG00230045364	pseudogene	Chr2:83211903-83227885 (-)
NOD/ShiLtJ	ENSMUSG00190051165	pseudogene	Chr2:81500904-81517177 (-)
NZO/HlLtJ	ENSMUSG00225003294	pseudogene	Chr2:91095996-91112288 (-)
PWK/PhJ	ENSLUMG00010035373	pseudogene	Chr2:81400995-81416733 (-)
SPRET/EiJ	ENSMSPG00010052088	pseudogene	Chr2:83303295-83318534 (-)
WSB/EiJ	ENSIUOG00005011422	pseudogene	Chr2:81441156-81457168 (-)

Homology

• Gene Tree
  Gm52948
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118521 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118521	Ensembl Gene Model | MGI Sequence Detail	16290	C57BL/6J
transcript	ENSMUST00000238924	Ensembl | MGI Sequence Detail	305	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;