Gm52947 Pseudogene Detail

Summary

• Symbol
  Gm52947
• Name
  predicted gene, 52947

• Feature Type
  pseudogene
• IDs
  MGI:6388826
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:84395089-84402881 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388826	pseudogene	Chr2:84395089-84402881 (+)
129S1/SvImJ	ENSMUSG00200054175	pseudogene	Chr2:81411504-81419296 (+)
A/J	ENSMUSG00195053802	pseudogene	Chr2:81532011-81532678 (+)
AKR/J	ENSMUSG00220002422	pseudogene	Chr2:81410683-81411350 (+)
BALB/cJ	ENSMUSG00180054883	pseudogene	Chr2:81459858-81460525 (+)
C3H/HeJ	ENSMUSG00175054222	pseudogene	Chr2:81599458-81600125 (+)
C57BL/6NJ	ENSMUSG00215053606	pseudogene	Chr2:81496601-81504393 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031527	pseudogene	Chr2:80950324-80950991 (+)
CBA/J	ENSMUSG00210040800	pseudogene	Chr2:81627361-81628028 (+)
DBA/2J	ENSMUSG00185057107	pseudogene	Chr2:81456100-81456767 (+)
FVB/NJ	ENSMUSG00205020093	pseudogene	Chr2:80831764-80832431 (+)
JF1/MsJ	ENSUMUG00000033325	pseudogene	Chr2:81380908-81381575 (+)
LP/J	ENSMUSG00230045515	pseudogene	Chr2:83207208-83207875 (+)
NOD/ShiLtJ	ENSMUSG00190051177	pseudogene	Chr2:81489096-81496888 (+)
NZO/HlLtJ	ENSMUSG00225003304	pseudogene	Chr2:91084190-91091982 (+)
PWK/PhJ	ENSLUMG00010035433	pseudogene	Chr2:81396338-81397005 (+)
SPRET/EiJ	ENSMSPG00010052089	pseudogene	Chr2:83298635-83299303 (+)
WSB/EiJ	ENSIUOG00005011435	pseudogene	Chr2:81436465-81437132 (+)

Homology

• Gene Tree
  Gm52947
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118570 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118570	Ensembl Gene Model | MGI Sequence Detail	7793	C57BL/6J
transcript	ENSMUST00000238875	Ensembl | MGI Sequence Detail	690	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;