Gm52946 Pseudogene Detail

Summary

• Symbol
  Gm52946
• Name
  predicted gene, 52946

• Feature Type
  pseudogene
• IDs
  MGI:6388825
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:3453336-3454824 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388825	pseudogene	Chr16:3453336-3454824 (-)
129S1/SvImJ	ENSMUSG00200012191	pseudogene	Chr16:444702-446190 (-)
A/J	no annotation
AKR/J	ENSMUSG00220017636	pseudogene	Chr16:296026-297514 (-)
BALB/cJ	ENSMUSG00180009014	pseudogene	Chr16:245608-247096 (-)
C3H/HeJ	ENSMUSG00175030793	pseudogene	Chr16:436931-438420 (-)
C57BL/6NJ	ENSMUSG00215020308	pseudogene	Chr16:118139-119627 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032284	pseudogene	Chr16:320641-322130 (-)
CBA/J	ENSMUSG00210012231	pseudogene	Chr16:454267-455755 (-)
DBA/2J	ENSMUSG00185010409	pseudogene	Chr16:399465-400953 (-)
FVB/NJ	ENSMUSG00205013401	pseudogene	Chr16:320791-322275 (-)
JF1/MsJ	ENSUMUG00000037355	pseudogene	Chr16:421569-423049 (-)
LP/J	ENSMUSG00230012153	pseudogene	Chr16:2940513-2942001 (-)
NOD/ShiLtJ	ENSMUSG00190027752	pseudogene	Chr16:474857-476345 (-)
NZO/HlLtJ	ENSMUSG00225023189	pseudogene	Chr16:6182841-6184329 (-)
PWK/PhJ	ENSLUMG00010017966	pseudogene	Chr16:299031-300507 (-)
SPRET/EiJ	ENSMSPG00010018523	pseudogene	Chr16:296184-297722 (-)
WSB/EiJ	ENSIUOG00005017176	pseudogene	Chr16:444069-445557 (-)

Homology

• Gene Tree
  Gm52946
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000118529 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118529	Ensembl Gene Model | MGI Sequence Detail	1489	C57BL/6J
transcript	ENSMUST00000238802	Ensembl | MGI Sequence Detail	644	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;