Gm52870 Gene Detail

Summary

• Symbol
  Gm52870
• Name
  predicted gene, 52870

• Feature Type
  lncRNA gene
• IDs
  MGI:6367319
  NCBI Gene: 115490362
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:99181413-99211755 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  842 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6367319	lncRNA gene	Chr6:99181364-99234662 (+)
129S1/SvImJ	ENSMUSG00200021020	lncRNA gene	Chr6:96177964-96206785 (+)
A/J	ENSMUSG00195002186	lncRNA gene	Chr6:95876633-95905480 (+)
AKR/J	ENSMUSG00220022459	lncRNA gene	Chr6:94790451-94819271 (+)
BALB/cJ	ENSMUSG00180009921	lncRNA gene	Chr6:96260994-96289820 (+)
C3H/HeJ	ENSMUSG00175016898	lncRNA gene	Chr6:81137066-81165884 (-)
C57BL/6NJ	ENSMUSG00215013977	lncRNA gene	Chr6:96257484-96286304 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001466	lncRNA gene	Chr6:96261920-96290620 (+)
CBA/J	ENSMUSG00210004094	lncRNA gene	Chr6:96066769-96095588 (+)
DBA/2J	ENSMUSG00185026291	lncRNA gene	Chr6:96548495-96577305 (+)
FVB/NJ	ENSMUSG00205012594	lncRNA gene	Chr6:95256170-95284994 (+)
JF1/MsJ	ENSUMUG00000002667	lncRNA gene	Chr6:95417445-95446075 (+)
LP/J	ENSMUSG00230013160	lncRNA gene	Chr6:97720717-97749535 (+)
NOD/ShiLtJ	ENSMUSG00190002946	lncRNA gene	Chr6:95721240-95750061 (+)
NZO/HlLtJ	ENSMUSG00225040332	lncRNA gene	Chr6:99722287-99751106 (+)
PWK/PhJ	ENSLUMG00010016318	lncRNA gene	Chr6:94867604-94896241 (+)
SPRET/EiJ	ENSMSPG00010019775	lncRNA gene	Chr6:97262510-97291188 (+)
WSB/EiJ	ENSIUOG00005002869	lncRNA gene	Chr6:96648870-96677666 (+)

Homology

• Gene Tree
  Gm52870
  

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2

• Ensembl
  ENSMUSG00000121205 (Evidence)
• NCBI Gene
  115490362

Representative Sequences			Length	Strain/Species
genomic	115490362	NCBI Gene Model | MGI Sequence Detail	30343	C57BL/6J
transcript	XR_004933788	RefSeq | MGI Sequence Detail	7581	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm52870:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57968	Chr6:99181399-99181420 (+)	-3 bp