Gm52829 Gene Detail

Summary

• Symbol
  Gm52829
• Name
  predicted gene, 52829

• Feature Type
  lncRNA gene
• IDs
  MGI:6367268
  NCBI Gene: 115490210
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:117547991-117551252 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6367268	lncRNA gene	Chr5:117535040-117551315 (+)
129S1/SvImJ	ENSMUSG00200024042	lncRNA gene	Chr5:111284343-111299290 (+)
A/J	ENSMUSG00195041630	lncRNA gene	Chr5:110797905-110812853 (+)
AKR/J	ENSMUSG00220052123	lncRNA gene	Chr5:110298677-110313625 (+)
BALB/cJ	ENSMUSG00180048155	lncRNA gene	Chr5:110919702-110934645 (+)
C3H/HeJ	ENSMUSG00175032266	lncRNA gene	Chr5:112915848-112931567 (+)
C57BL/6NJ	ENSMUSG00215039033	lncRNA gene	Chr5:110938500-110954220 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033613	lncRNA gene	Chr5:110108921-110124034 (+)
CBA/J	ENSMUSG00210010405	lncRNA gene	Chr5:111666907-111682624 (+)
DBA/2J	ENSMUSG00185054327	lncRNA gene	Chr5:114730095-114745303 (+)
FVB/NJ	ENSMUSG00205052627	lncRNA gene	Chr5:110573833-110589526 (+)
JF1/MsJ	ENSUMUG00000054919	lncRNA gene	Chr5:117555771-117571003 (+)
LP/J	ENSMUSG00230049539	lncRNA gene	Chr5:118806863-118821810 (+)
NOD/ShiLtJ	ENSMUSG00190050377	lncRNA gene	Chr5:110606634-110622329 (+)
NZO/HlLtJ	ENSMUSG00225016831	lncRNA gene	Chr5:126479423-126494630 (+)
PWK/PhJ	ENSLUMG00010042242	lncRNA gene	Chr5:109447199-109462316 (+)
SPRET/EiJ	ENSMSPG00010045833	lncRNA gene	Chr5:112756325-112779386 (+)
WSB/EiJ	ENSIUOG00005020522	lncRNA gene	Chr5:113295449-113311166 (+)

Homology

• Gene Tree
  Gm52829
  

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000120827 (Evidence)
• NCBI Gene
  115490210

Representative Sequences			Length	Strain/Species
genomic	115490210	NCBI Gene Model | MGI Sequence Detail	3262	C57BL/6J
transcript	XR_003955989	RefSeq | MGI Sequence Detail	246	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;