Gm52713 Gene Detail

Summary

• Symbol
  Gm52713
• Name
  predicted gene, 52713

• Feature Type
  lncRNA gene
• IDs
  MGI:6367069
  NCBI Gene: 115489959
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:155318564-155321237 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6367069	lncRNA gene	Chr4:155318564-155328401 (+)
129S1/SvImJ	ENSMUSG00200019752	lncRNA gene	Chr4:146374791-146375863 (+)
A/J	ENSMUSG00195020521	lncRNA gene	Chr4:148040813-148041885 (+)
AKR/J	ENSMUSG00220028507	lncRNA gene	Chr4:147616264-147617336 (+)
BALB/cJ	ENSMUSG00180002723	lncRNA gene	Chr4:145689860-145690932 (+)
C3H/HeJ	ENSMUSG00175019814	lncRNA gene	Chr4:148996096-148997168 (+)
C57BL/6NJ	ENSMUSG00215028918	lncRNA gene	Chr4:147842228-147843300 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034843	lncRNA gene	Chr4:151702436-151703508 (+)
CBA/J	ENSMUSG00210006093	lncRNA gene	Chr4:147654421-147655493 (+)
DBA/2J	ENSMUSG00185017159	lncRNA gene	Chr4:151212013-151213085 (+)
FVB/NJ	ENSMUSG00205022528	lncRNA gene	Chr4:146108211-146109283 (+)
JF1/MsJ	ENSUMUG00000000462	lncRNA gene	Chr4:154243699-154244770 (+)
LP/J	ENSMUSG00230025813	lncRNA gene	Chr4:157937806-157938878 (+)
NOD/ShiLtJ	ENSMUSG00190004284	lncRNA gene	Chr4:147311834-147312906 (+)
NZO/HlLtJ	ENSMUSG00225024572	lncRNA gene	Chr4:161934565-161935637 (+)
PWK/PhJ	ENSLUMG00010028016	lncRNA gene	Chr4:146500159-146501230 (+)
SPRET/EiJ	ENSMSPG00010025306	lncRNA gene	Chr4:148438275-148439345 (+)
WSB/EiJ	ENSIUOG00005006907	lncRNA gene	Chr4:145523197-145524269 (+)

Homology

• Gene Tree
  Gm52713
  

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000120354 (Evidence)
• NCBI Gene
  115489959

Representative Sequences			Length	Strain/Species
genomic	115489959	NCBI Gene Model | MGI Sequence Detail	2674	C57BL/6J
transcript	XR_003955323	RefSeq | MGI Sequence Detail	1719	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm52713:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40624	Chr4:155318993-155319004 (+)	435 bp
Tssr40625	Chr4:155319943-155319979 (+)	1,397 bp