Gm52698 Gene Detail

Summary

• Symbol
  Gm52698
• Name
  predicted gene, 52698

• Feature Type
  lncRNA gene
• IDs
  MGI:6367039
  NCBI Gene: 115489928
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:43389065-43400886 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  616 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6367039	lncRNA gene	Chr4:43359900-43400886 (-)
129S1/SvImJ	ENSMUSG00200005675	lncRNA gene	Chr4:39432204-39434548 (-)
A/J	ENSMUSG00195003726	lncRNA gene	Chr4:39905449-39907794 (-)
AKR/J	ENSMUSG00220036513	lncRNA gene	Chr4:39589998-39592342 (-)
BALB/cJ	ENSMUSG00180026644	lncRNA gene	Chr4:39492205-39494550 (-)
C3H/HeJ	ENSMUSG00175023924	lncRNA gene	Chr4:39636536-39638881 (-)
C57BL/6NJ	ENSMUSG00215030960	lncRNA gene	Chr4:39417781-39420150 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004797	lncRNA gene	Chr4:39678848-39681218 (-)
CBA/J	ENSMUSG00210008308	lncRNA gene	Chr4:39321454-39323798 (-)
DBA/2J	ENSMUSG00185006698	lncRNA gene	Chr4:39684887-39687231 (-)
FVB/NJ	ENSMUSG00205027856	lncRNA gene	Chr4:38928140-38930484 (-)
JF1/MsJ	ENSUMUG00000028848	lncRNA gene	Chr4:39930781-39933116 (-)
LP/J	ENSMUSG00230042670	lncRNA gene	Chr4:43245652-43248021 (-)
NOD/ShiLtJ	ENSMUSG00190006278	lncRNA gene	Chr4:39548334-39550678 (-)
NZO/HlLtJ	ENSMUSG00225007319	lncRNA gene	Chr4:47832828-47835197 (-)
PWK/PhJ	ENSLUMG00010006792	lncRNA gene	Chr4:38932637-38934982 (-)
SPRET/EiJ	ENSMSPG00010025547	lncRNA gene	Chr4:39867439-39869823 (-)
WSB/EiJ	ENSIUOG00005049839	lncRNA gene	Chr4:39303936-39306280 (-)

Homology

• Gene Tree
  Gm52698
  

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  2

• Ensembl
  ENSMUSG00000120990 (Evidence)
• NCBI Gene
  115489928

Representative Sequences			Length	Strain/Species
genomic	115489928	NCBI Gene Model | MGI Sequence Detail	11822	C57BL/6J
transcript	XR_003955205	RefSeq | MGI Sequence Detail	11144	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm52698:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41406	Chr4:43399769-43399799 (-)	1,102 bp