Gm52182 Gene Detail

Summary

• Symbol
  Gm52182
• Name
  predicted gene, 52182

• Feature Type
  lncRNA gene
• IDs
  MGI:6366239
  NCBI Gene: 115488483
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:83476770-83479647 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6366239	lncRNA gene	Chr15:83476619-83482401 (+)
129S1/SvImJ	ENSMUSG00200054057	lncRNA gene	Chr15:80604124-80606553 (+)
A/J	ENSMUSG00195051814	lncRNA gene	Chr15:80529020-80531454 (+)
AKR/J	ENSMUSG00220053239	lncRNA gene	Chr15:80572698-80575127 (+)
BALB/cJ	ENSMUSG00180053612	lncRNA gene	Chr15:80405924-80408358 (+)
C3H/HeJ	ENSMUSG00175053431	lncRNA gene	Chr15:80716857-80719291 (+)
C57BL/6NJ	ENSMUSG00215053001	lncRNA gene	Chr15:80494844-80497278 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048492	lncRNA gene	Chr15:79996580-79999004 (+)
CBA/J	ENSMUSG00210049559	lncRNA gene	Chr15:80491855-80494289 (+)
DBA/2J	ENSMUSG00185052377	lncRNA gene	Chr15:80526744-80529173 (+)
FVB/NJ	ENSMUSG00205052993	lncRNA gene	Chr15:80273824-80276258 (+)
JF1/MsJ	ENSUMUG00000056824	lncRNA gene	Chr15:80056487-80058964 (+)
LP/J	ENSMUSG00230045937	lncRNA gene	Chr15:83844442-83846871 (+)
NOD/ShiLtJ	ENSMUSG00190053725	lncRNA gene	Chr15:80508969-80511403 (+)
NZO/HlLtJ	ENSMUSG00225050294	lncRNA gene	Chr15:84176708-84179137 (+)
PWK/PhJ	ENSLUMG00010053099	lncRNA gene	Chr15:80260637-80263117 (+)
SPRET/EiJ	ENSMSPG00010051194	lncRNA gene	Chr15:81920607-81923092 (+)
WSB/EiJ	ENSIUOG00005050409	lncRNA gene	Chr15:80592199-80594879 (+)

Homology

• Gene Tree
  Gm52182
  

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000121132 (Evidence)
• NCBI Gene
  115488483

Representative Sequences			Length	Strain/Species
genomic	115488483	NCBI Gene Model | MGI Sequence Detail	2878	C57BL/6J
transcript	XR_003951514	RefSeq | MGI Sequence Detail	2085	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm52182:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132432	Chr15:83477200-83477226 (+)	443 bp