Gm52147 Gene Detail

Summary

• Symbol
  Gm52147
• Name
  predicted gene, 52147

• Feature Type
  lncRNA gene
• IDs
  MGI:6366197
  NCBI Gene: 115488369
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:30318587-30319514 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6366197	lncRNA gene	Chr14:30318587-30319971 (+)
129S1/SvImJ	ENSMUSG00200038610	lncRNA gene	Chr14:22140284-22141644 (+)
A/J	ENSMUSG00195013912	lncRNA gene	Chr14:23217456-23218814 (+)
AKR/J	ENSMUSG00220037141	lncRNA gene	Chr14:22329850-22331208 (+)
BALB/cJ	ENSMUSG00180029660	lncRNA gene	Chr14:22306068-22307426 (+)
C3H/HeJ	ENSMUSG00175043144	lncRNA gene	Chr14:22373345-22374704 (+)
C57BL/6NJ	ENSMUSG00215032780	lncRNA gene	Chr14:22610027-22611387 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025207	lncRNA gene	Chr14:22446372-22447733 (+)
CBA/J	ENSMUSG00210044053	lncRNA gene	Chr14:22616326-22617684 (+)
DBA/2J	ENSMUSG00185042473	lncRNA gene	Chr14:26884046-26885406 (+)
FVB/NJ	ENSMUSG00205040251	lncRNA gene	Chr14:22475354-22476712 (+)
JF1/MsJ	ENSUMUG00000050227	lncRNA gene	Chr14:34140717-34142078 (+)
LP/J	ENSMUSG00230038048	lncRNA gene	Chr14:34164310-34165670 (+)
NOD/ShiLtJ	ENSMUSG00190019610	lncRNA gene	Chr14:22629915-22631273 (+)
NZO/HlLtJ	ENSMUSG00225037973	lncRNA gene	Chr14:28504584-28505942 (+)
PWK/PhJ	ENSLUMG00010022791	lncRNA gene	Chr14:10733360-10734724 (+)
SPRET/EiJ	ENSMSPG00010042763	lncRNA gene	Chr14:24284187-24285549 (+)
WSB/EiJ	ENSIUOG00005012724	lncRNA gene	Chr14:22434395-22435761 (+)

Homology

• Gene Tree
  Gm52147
  

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000120912 (Evidence)
• NCBI Gene
  115488369

Representative Sequences			Length	Strain/Species
genomic	115488369	NCBI Gene Model | MGI Sequence Detail	928	C57BL/6J
transcript	XR_003951217	RefSeq | MGI Sequence Detail	218	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm52147:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124837	Chr14:30317943-30317959 (+)	-636 bp
Tssr124838	Chr14:30318598-30318616 (+)	20 bp