Gm52054 Gene Detail

Summary

• Symbol
  Gm52054
• Name
  predicted gene, 52054

• Feature Type
  lncRNA gene
• IDs
  MGI:6366047
  NCBI Gene: 115488174
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:103910730-103915819 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6366047	lncRNA gene	Chr13:103910472-103915819 (+)
129S1/SvImJ	ENSMUSG00200009764	lncRNA gene	Chr13:98325261-98327339 (+)
A/J	ENSMUSG00195030273	lncRNA gene	Chr13:98919310-98921388 (+)
AKR/J	ENSMUSG00220028786	lncRNA gene	Chr13:97348114-97350192 (+)
BALB/cJ	ENSMUSG00180037389	lncRNA gene	Chr13:99472693-99474771 (+)
C3H/HeJ	ENSMUSG00175017709	lncRNA gene	Chr13:99571517-99573595 (+)
C57BL/6NJ	ENSMUSG00215032383	lncRNA gene	Chr13:99558091-99560169 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011824	lncRNA gene	Chr13:98676371-98678449 (+)
CBA/J	ENSMUSG00210011956	lncRNA gene	Chr13:98892515-98894593 (+)
DBA/2J	ENSMUSG00185027151	lncRNA gene	Chr13:102645790-102647868 (+)
FVB/NJ	ENSMUSG00205037548	lncRNA gene	Chr13:98330010-98332088 (+)
JF1/MsJ	ENSUMUG00000014517	lncRNA gene	Chr13:102233320-102235384 (+)
LP/J	ENSMUSG00230008504	lncRNA gene	Chr13:112794987-112797065 (+)
NOD/ShiLtJ	ENSMUSG00190045534	lncRNA gene	Chr13:99222704-99224782 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010025831	lncRNA gene	Chr13:98289921-98291986 (+)
SPRET/EiJ	ENSMSPG00010009440	lncRNA gene	Chr13:99690199-99692282 (+)
WSB/EiJ	ENSIUOG00005036491	lncRNA gene	Chr13:98323102-98325179 (+)

Homology

• Gene Tree
  Gm52054
  

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  3

• Ensembl
  ENSMUSG00000120696 (Evidence)
• NCBI Gene
  115488174

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120696	Ensembl Gene Model | MGI Sequence Detail	5090	C57BL/6J
transcript	ENSMUST00000340700	Ensembl | MGI Sequence Detail	1278	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm52054:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120903	Chr13:103911154-103911171 (+)	433 bp
Tssr120904	Chr13:103911175-103911186 (+)	451 bp