Gm51903 Gene Detail

Summary

• Symbol
  Gm51903
• Name
  predicted gene, 51903

• Feature Type
  lncRNA gene
• IDs
  MGI:6365798
  NCBI Gene: 115487782
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:69306288-69311629 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6365798	lncRNA gene	Chr11:69305463-69311629 (+)
129S1/SvImJ	ENSMUSG00200050404	lncRNA gene	Chr11:66255678-66256734 (+)
A/J	ENSMUSG00195052620	lncRNA gene	Chr11:66281022-66282078 (+)
AKR/J	ENSMUSG00220054223	lncRNA gene	Chr11:66390768-66391827 (+)
BALB/cJ	ENSMUSG00180054100	lncRNA gene	Chr11:66352284-66353340 (+)
C3H/HeJ	ENSMUSG00175054506	lncRNA gene	Chr11:66302586-66303642 (+)
C57BL/6NJ	ENSMUSG00215055039	lncRNA gene	Chr11:66078911-66079970 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053710	lncRNA gene	Chr11:65837679-65838735 (+)
CBA/J	ENSMUSG00210054432	lncRNA gene	Chr11:66156656-66157712 (+)
DBA/2J	ENSMUSG00185056724	lncRNA gene	Chr11:66356078-66357135 (+)
FVB/NJ	ENSMUSG00205053905	lncRNA gene	Chr11:66247749-66248805 (+)
JF1/MsJ	ENSUMUG00000057316	lncRNA gene	Chr11:66754265-66755322 (+)
LP/J	ENSMUSG00230053725	lncRNA gene	Chr11:67466040-67467096 (+)
NOD/ShiLtJ	ENSMUSG00190054285	lncRNA gene	Chr11:66385410-66386466 (+)
NZO/HlLtJ	ENSMUSG00225048484	lncRNA gene	Chr11:69646544-69647600 (+)
PWK/PhJ	ENSLUMG00010053689	lncRNA gene	Chr11:66271181-66272236 (+)
SPRET/EiJ	ENSMSPG00010049308	lncRNA gene	Chr11:67000288-67001353 (+)
WSB/EiJ	ENSIUOG00005052690	lncRNA gene	Chr11:66284682-66285740 (+)

Homology

• Gene Tree
  Gm51903
  

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000120677 (Evidence)
• NCBI Gene
  115487782

Representative Sequences			Length	Strain/Species
genomic	115487782	NCBI Gene Model | MGI Sequence Detail	5342	C57BL/6J
transcript	XR_003949708	RefSeq | MGI Sequence Detail	2138	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm51903:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102472	Chr11:69309974-69309999 (+)	3,699 bp