Gm51802 Gene Detail

Summary

• Symbol
  Gm51802
• Name
  predicted gene, 51802

• Feature Type
  lncRNA gene
• IDs
  MGI:6365653
  NCBI Gene: 115487453
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:59983365-59998213 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  564 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6365653	lncRNA gene	Chr10:59983362-60008273 (-)
129S1/SvImJ	ENSMUSG00200029894	lncRNA gene	Chr10:56647741-56662620 (-)
A/J	ENSMUSG00195028145	lncRNA gene	Chr10:56954615-56969495 (-)
AKR/J	ENSMUSG00220043094	lncRNA gene	Chr10:56652330-56667208 (-)
BALB/cJ	ENSMUSG00180027364	lncRNA gene	Chr10:57002494-57017369 (-)
C3H/HeJ	ENSMUSG00175025922	lncRNA gene	Chr10:56855020-56869893 (-)
C57BL/6NJ	ENSMUSG00215033280	lncRNA gene	Chr10:56600633-56615508 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029950	lncRNA gene	Chr10:56649129-56662272 (-)
CBA/J	ENSMUSG00210039163	lncRNA gene	Chr10:56733328-56748211 (-)
DBA/2J	ENSMUSG00185043014	lncRNA gene	Chr10:57080090-57094965 (-)
FVB/NJ	ENSMUSG00205035900	lncRNA gene	Chr10:56752511-56767385 (-)
JF1/MsJ	ENSUMUG00000023306	lncRNA gene	Chr10:58315956-58329616 (-)
LP/J	ENSMUSG00230023499	lncRNA gene	Chr10:58883301-58898177 (-)
NOD/ShiLtJ	ENSMUSG00190037629	lncRNA gene	Chr10:57065927-57080807 (-)
NZO/HlLtJ	ENSMUSG00225045582	lncRNA gene	Chr10:63164236-63179111 (-)
PWK/PhJ	ENSLUMG00010023868	lncRNA gene	Chr10:56669188-56682837 (-)
SPRET/EiJ	ENSMSPG00010026307	lncRNA gene	Chr10:58264345-58264418 (-)
WSB/EiJ	ENSIUOG00005041416	lncRNA gene	Chr10:56631534-56646465 (-)

Homology

• Gene Tree
  Gm51802
  

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000120321 (Evidence)
• NCBI Gene
  115487453

Representative Sequences			Length	Strain/Species
genomic	115487453	NCBI Gene Model | MGI Sequence Detail	14849	C57BL/6J
transcript	NR_168572	RefSeq | MGI Sequence Detail	379	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm51802:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3211	Chr10:59998234-59998237 (-)	-23 bp
Tssr97694	Chr10:59998206-59998220 (-)	0 bp
Tssr97693	Chr10:59998194-59998204 (-)	14 bp