Gm51425 Gene Detail

Summary

• Symbol
  Gm51425
• Name
  predicted gene, 51425

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:6365015
  NCBI Gene: 115486031
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:17225378-17261817 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  698 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6365015	protein coding gene	Chr17:17225327-17261817 (+)
129S1/SvImJ	ENSMUSG00200039222	lncRNA gene	Chr17:12940774-12998069 (+)
129S1/SvImJ	ENSMUSG00200039216	lncRNA gene	Chr17:12857519-12884668 (+)
A/J	ENSMUSGG00195055021	protein coding gene	Chr17:13554190-13662386 (+)
A/J	ENSMUSG00195038513	lncRNA gene	Chr17:13607670-13662078 (+)
AKR/J	ENSMUSG00220028662	lncRNA gene	Chr17:13299887-13336367 (+)
BALB/cJ	ENSMUSG00180019694	lncRNA gene	Chr17:12846696-12901718 (+)
C3H/HeJ	ENSMUSG00175044432	lncRNA gene	Chr17:12725628-12762128 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023554	lncRNA gene	Chr17:13232594-13262737 (+)
CBA/J	ENSMUSG00210044835	lncRNA gene	Chr17:12569613-12607707 (+)
DBA/2J	ENSMUSG00185041126	lncRNA gene	Chr17:14702756-14739223 (+)
DBA/2J	ENSMUSG00185037218	protein coding gene	Chr17:14574586-14668714 (+)
DBA/2J	ENSMUSG00185042394	lncRNA gene	Chr17:14574795-14611322 (+)
FVB/NJ	ENSMUSG00205039081	lncRNA gene	Chr17:13229442-13271375 (+)
JF1/MsJ	ENSUMUG00000041425	lncRNA gene	Chr17:14124879-14161230 (+)
LP/J	ENSMUSG00230028126	lncRNA gene	Chr17:16100958-16137425 (+)
LP/J	ENSMUSG00230026571	protein coding gene	Chr17:15947651-16067137 (+)
LP/J	ENSMUSG00230028283	lncRNA gene	Chr17:15973005-16009534 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225046998	protein coding gene	Chr17:17901296-18020775 (+)
NZO/HlLtJ	ENSMUSG00225049395	lncRNA gene	Chr17:17926651-17963172 (+)
NZO/HlLtJ	ENSMUSG00225048825	lncRNA gene	Chr17:18054595-18091056 (+)
PWK/PhJ	ENSLUMG00010021819	lncRNA gene	Chr17:12852989-12889631 (+)
SPRET/EiJ	ENSMSPG00010041881	lncRNA gene	Chr17:14161726-14191381 (+)
WSB/EiJ	ENSIUOG00005042528	lncRNA gene	Chr17:13637193-13673747 (+)

Homology

• Gene Tree
  Gm51425
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  18
• Gene trapped
  18
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  4

• Ensembl
  ENSMUSG00000120995 (Evidence)
• NCBI Gene
  115486031

Representative Sequences			Length	Strain/Species
genomic	115486031	NCBI Gene Model | MGI Sequence Detail	36440	C57BL/6J
transcript	NM_001374000	RefSeq | MGI Sequence Detail	2987	ZRU/MplStud
polypeptide	NP_001360931	RefSeq | MGI Sequence Detail	667	ZRU/MplStud

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm51425:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142777	Chr17:17225371-17225398 (+)	7 bp