Gm50481 Pseudogene Detail

Summary

• Symbol
  Gm50481
• Name
  predicted gene, 50481

• Feature Type
  pseudogene
• IDs
  MGI:6324754
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:21596221-21602076 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  280 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6324754	pseudogene	Chr13:21596221-21602076 (+)
129S1/SvImJ	ENSMUSG00200014407	pseudogene	Chr13:18794870-18800715 (+)
A/J	ENSMUSG00195040046	pseudogene	Chr13:17939318-17945192 (+)
AKR/J	ENSMUSG00220035012	pseudogene	Chr13:17854673-17860545 (+)
BALB/cJ	ENSMUSG00180036514	pseudogene	Chr13:18300600-18306473 (+)
C3H/HeJ	ENSMUSG00175035078	pseudogene	Chr13:18405732-18411605 (+)
C57BL/6NJ	ENSMUSG00215030199	pseudogene	Chr13:18351956-18357812 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014316	pseudogene	Chr13:18421263-18427131 (+)
CBA/J	ENSMUSG00210031537	pseudogene	Chr13:18267313-18273187 (+)
DBA/2J	ENSMUSG00185014156	pseudogene	Chr13:18961680-18967553 (+)
FVB/NJ	ENSMUSG00205051663	pseudogene	Chr13:18111108-18116980 (+)
JF1/MsJ	ENSUMUG00000025198	pseudogene	Chr13:18678412-18684301 (+)
LP/J	ENSMUSG00230035497	pseudogene	Chr13:28355711-28361581 (+)
NOD/ShiLtJ	ENSMUSG00190023040	pseudogene	Chr13:18220497-18226368 (+)
NZO/HlLtJ	ENSMUSG00225045951	pseudogene	Chr13:22116131-22121986 (+)
PWK/PhJ	ENSLUMG00010030023	pseudogene	Chr13:17672018-17677906 (+)
SPRET/EiJ	ENSMSPG00010019724	pseudogene	Chr13:17391806-17397664 (+)
WSB/EiJ	ENSIUOG00005038030	pseudogene	Chr13:17596444-17602316 (+)

Homology

• Gene Tree
  Gm50481
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118467 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118467	Ensembl Gene Model | MGI Sequence Detail	5856	C57BL/6J
transcript	ENSMUST00000238543	Ensembl | MGI Sequence Detail	1105	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50481:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118781	Chr13:21600190-21600194 (+)	3,971 bp