Gm50477 Gene Detail

Summary

• Symbol
  Gm50477
• Name
  predicted gene, 50477
• Synonyms
  Gm51469

• Feature Type
  lncRNA gene
• IDs
  MGI:6324748
  NCBI Gene: 115486501
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:23987716-23988738 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6324748	lncRNA gene	Chr7:23979999-23988738 (+)
129S1/SvImJ	ENSMUSG00200045899	lncRNA gene	Chr7:13988748-13990112 (+)
A/J	ENSMUSG00195054011	lncRNA gene	Chr7:16419731-16420736 (+)
AKR/J	ENSMUSG00220053763	lncRNA gene	Chr7:27962266-27963273 (-)
BALB/cJ	ENSMUSG00180054234	lncRNA gene	Chr7:14491716-14492724 (+)
C3H/HeJ	ENSMUSG00175052426	lncRNA gene	Chr7:15547377-15548733 (+)
C57BL/6NJ	ENSMUSG00215054917	lncRNA gene	Chr7:13903295-13904301 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052732	lncRNA gene	Chr7:15588725-15589187 (+)
CBA/J	ENSMUSG00210053708	lncRNA gene	Chr7:14733135-14734493 (+)
DBA/2J	ENSMUSG00185055015	lncRNA gene	Chr7:17942153-17943166 (+)
FVB/NJ	ENSMUSG00205052215	lncRNA gene	Chr7:14739775-14740778 (+)
JF1/MsJ	ENSUMUG00000057612	lncRNA gene	Chr7:22243222-22244577 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190052444	lncRNA gene	Chr7:14214854-14216210 (+)
NZO/HlLtJ	ENSMUSG00225027210	lncRNA gene	Chr7:21883997-21885009 (+)
PWK/PhJ	ENSLUMG00010051839	lncRNA gene	Chr7:14176788-14177785 (+)
SPRET/EiJ	ENSMSPG00010051551	lncRNA gene	Chr7:13839638-13840667 (+)
WSB/EiJ	ENSIUOG00005052812	lncRNA gene	Chr7:8667603-8668612 (+)

Homology

• Gene Tree
  Gm50477
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000118444 (Evidence)
• NCBI Gene
  115486501

Representative Sequences			Length	Strain/Species
genomic	115486501	NCBI Gene Model | MGI Sequence Detail	1023	C57BL/6J
transcript	XR_003946724	RefSeq | MGI Sequence Detail	493	C57BL/6J

Other
Accession IDs

MGI:6365087

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;