Gm50475 Gene Detail

Summary

• Symbol
  Gm50475
• Name
  predicted gene, 50475

• Feature Type
  lncRNA gene
• IDs
  MGI:6324745
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:131648127-131648839 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6324745	lncRNA gene	Chr4:131648127-131648839 (-)
129S1/SvImJ	ENSMUSG00200020973	lncRNA gene	Chr4:125102271-125102983 (-)
A/J	ENSMUSG00195044936	lncRNA gene	Chr4:126427312-126428024 (-)
AKR/J	ENSMUSG00220047500	lncRNA gene	Chr4:125419068-125419780 (-)
BALB/cJ	ENSMUSG00180049571	lncRNA gene	Chr4:124060930-124061642 (-)
C3H/HeJ	ENSMUSG00175047812	lncRNA gene	Chr4:125073355-125074067 (-)
C57BL/6NJ	ENSMUSG00215052291	lncRNA gene	Chr4:126577248-126577960 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048317	lncRNA gene	Chr4:125967105-125967813 (-)
CBA/J	ENSMUSG00210054028	lncRNA gene	Chr4:124702313-124703025 (-)
DBA/2J	ENSMUSG00185053149	lncRNA gene	Chr4:126234766-126235478 (-)
FVB/NJ	ENSMUSG00205049386	lncRNA gene	Chr4:124475497-124476209 (-)
JF1/MsJ	ENSUMUG00000047594	lncRNA gene	Chr4:126898829-126899541 (-)
LP/J	ENSMUSG00230038727	lncRNA gene	Chr4:130040799-130041511 (-)
NOD/ShiLtJ	ENSMUSG00190048627	lncRNA gene	Chr4:124467073-124467785 (-)
NZO/HlLtJ	ENSMUSG00225026654	lncRNA gene	Chr4:135945507-135946219 (-)
PWK/PhJ	ENSLUMG00010050144	lncRNA gene	Chr4:123920164-123920876 (-)
SPRET/EiJ	ENSMSPG00010046364	lncRNA gene	Chr4:125982338-125983046 (-)
WSB/EiJ	ENSIUOG00005045855	lncRNA gene	Chr4:124353912-124354623 (-)

Homology

• Gene Tree
  Gm50475
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118394 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118394	Ensembl Gene Model | MGI Sequence Detail	713	C57BL/6J
transcript	ENSMUST00000238664	Ensembl | MGI Sequence Detail	511	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50475:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43617	Chr4:131648330-131648333 (-)	507 bp