Gm50472 Pseudogene Detail

Summary

• Symbol
  Gm50472
• Name
  predicted gene, 50472

• Feature Type
  pseudogene
• IDs
  MGI:6324742
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:75206196-75206423 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6324742	pseudogene	Chr1:75206196-75206423 (+)
129S1/SvImJ	ENSMUSG00200035430	pseudogene	Chr1:72866268-72866495 (+)
A/J	ENSMUSG00195010464	pseudogene	Chr1:72291124-72291351 (+)
AKR/J	ENSMUSG00220010861	pseudogene	Chr1:72436330-72436557 (+)
BALB/cJ	ENSMUSG00180020417	pseudogene	Chr1:72553009-72553236 (+)
C3H/HeJ	ENSMUSG00175018626	pseudogene	Chr1:72691507-72691734 (+)
C57BL/6NJ	ENSMUSG00215029539	pseudogene	Chr1:72598353-72598580 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029128	pseudogene	Chr1:72315803-72316030 (+)
CBA/J	ENSMUSG00210042272	pseudogene	Chr1:72374973-72375200 (+)
DBA/2J	ENSMUSG00185033561	pseudogene	Chr1:73469705-73469932 (+)
FVB/NJ	ENSMUSG00205041004	pseudogene	Chr1:72047921-72048148 (+)
JF1/MsJ	ENSUMUG00000005864	pseudogene	Chr1:72368095-72368322 (+)
LP/J	ENSMUSG00230014029	pseudogene	Chr1:73459362-73459589 (+)
NOD/ShiLtJ	ENSMUSG00190038379	pseudogene	Chr1:72601417-72601644 (+)
NZO/HlLtJ	ENSMUSG00225040755	pseudogene	Chr1:76674498-76674725 (+)
PWK/PhJ	ENSLUMG00010013671	pseudogene	Chr1:71948734-71948961 (+)
SPRET/EiJ	ENSMSPG00010021254	pseudogene	Chr1:74034510-74034737 (+)
WSB/EiJ	ENSIUOG00005013716	pseudogene	Chr1:72222589-72222816 (+)

Homology

• Gene Tree
  Gm50472
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118482 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118482	Ensembl Gene Model | MGI Sequence Detail	228	C57BL/6J
transcript	ENSMUST00000238775	Ensembl | MGI Sequence Detail	228	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;